Browse Element(s) Details


Os.18461.1.S1_at

Description gb:AK069754.1
DB_XREF= gi:32979778
TID=Os.18461.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028G22, full insert sequence.
FL= gb:AK069754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6418011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64150Os.47463.1.S1_x_at3/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64150Os.14491.2.S1_x_at2/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64160NANA1+37591411..37594743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64170Os.4636.1.S2_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64170Os.4636.1.S1_a_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64180Os.18461.1.S1_at11/111+37602604..37604249expressed protein
LOC_Os01g64190Os.37413.1.S2_at11/111+37605840..37607296expressed protein
LOC_Os01g64190Os.37413.1.S1_at11/111+37605840..37607296expressed protein
LOC_Os01g64200OsAffx.24056.2.S1_at11/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64200OsAffx.24056.1.S1_x_at6/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64210OsAffx.23911.1.S1_at11/111+37615221..37615706hypothetical protein
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18461.1.S1_at--692--4151Chr01:37602977..37603001 (25 bp)
CCCCACGACAGGTAAGTAGGTTGCA
LOC_Os01g64180
Os.18461.1.S1_at--464--531Chr01:37602860..37602884 (25 bp)
ATCGCCGATAGGTGAGGTGAAGCCA
LOC_Os01g64180
Os.18461.1.S1_at--124--7771Chr01:37602845..37602869 (25 bp)
GGTGAAGCCAAAGCCGTGTCGAGTT
LOC_Os01g64180
Os.18461.1.S1_at--990--1671Chr01:37602834..37602858 (25 bp)
AGCCGTGTCGAGTTGTATCCATCAG
LOC_Os01g64180
Os.18461.1.S1_at--350--6911Chr01:37602820..37602844 (25 bp)
GTATCCATCAGATTCAGCGACGAGC
LOC_Os01g64180
Os.18461.1.S1_at--295--3531Chr01:37602773..37602797 (25 bp)
CATGCATGCCGCGATGGTGATTGGT
LOC_Os01g64180
Os.18461.1.S1_at--779--7751Chr01:37602758..37602782 (25 bp)
GGTGATTGGTGAATCGCCTCGAAAT
LOC_Os01g64180
Os.18461.1.S1_at--162--3051Chr01:37602747..37602771 (25 bp)
AATCGCCTCGAAATGGGAGTCTTGA
LOC_Os01g64180
Os.18461.1.S1_at--399--6091Chr01:37602731..37602755 (25 bp)
GAGTCTTGAAATTTACCGGTGGTGT
LOC_Os01g64180
Os.18461.1.S1_at--371--6851Chr01:37602666..37602690 (25 bp)
GTTTGCGTGCTGTGGCCAATGATCG
LOC_Os01g64180
Os.18461.1.S1_at--1131--2991Chr01:37602649..37602673 (25 bp)
AATGATCGCCGTTGTACTGTACATA
LOC_Os01g64180
Target Sequence 
CCCCACGACAGGTAAGTAGGTTGCAGCAGAGGCGGGAGAAGCAGTGGTAGATGCTGGTTGGATTTGGATACGATGGTGGG
GCCCCGCTGTAAGTGNCCCTNCGTAGGTTCGGGCGCGATCGCCGATAGGTGAGGTGAAGCCAAAGCCGTGTCGAGTTGTA
TCCATCAGATTCAGCGACGAGCCGACGAGGGATGGGCGCGGGATCATGCATGCCGCGATGGTGATTGGTGAATCGCCTCG
AAATGGGAGTCTTGAAATTTACCGGTGGTGTTTTTTGCTGTTTTGGAGTTTTGCACTTGGGGATCGGGAGTGTTTGCGTG
CTGTGGCCAATGATCGCCGTTGTACTGTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis