Browse Element(s) Details


Os.37904.1.S1_at

Description gb:AK100818.1
DB_XREF= gi:32986027
TID=Os.37904.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023122F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122F03, full insert sequence.
FL= gb:AK100818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6427011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37904.1.S1_at--498--4771Chr01:37642494..37642518 (25 bp)
GCTGCTCTTCCAGGTTAGCTGCATG
LOC_Os01g64270
Os.37904.1.S1_at--435--9091Chr01:37642496..37642520 (25 bp)
TGCTCTTCCAGGTTAGCTGCATGAA
LOC_Os01g64270
Os.37904.1.S1_at--331--10691Chr01:37642501..37642525 (25 bp)
TTCCAGGTTAGCTGCATGAAGCCAT
LOC_Os01g64270
Os.37904.1.S1_at--173--6771Chr01:37642507..37642531 (25 bp)
GTTAGCTGCATGAAGCCATGAATGA
LOC_Os01g64270
Os.37904.1.S1_at--1049--3151Chr01:37642565..37642589 (25 bp)
AATTCCGATGCATTGCTGCGTTGAC
LOC_Os01g64270
Os.37904.1.S1_at--427--4051Chr01:37642570..37642594 (25 bp)
CGATGCATTGCTGCGTTGACACTTA
LOC_Os01g64270
Os.37904.1.S1_at--423--9071Chr01:37642573..37642597 (25 bp)
TGCATTGCTGCGTTGACACTTACTA
LOC_Os01g64270
Os.37904.1.S1_at--405--71Chr01:37642576..37642600 (25 bp)
ATTGCTGCGTTGACACTTACTACAG
LOC_Os01g64270
Os.37904.1.S1_at--866--3811Chr01:37642580..37642604 (25 bp)
CTGCGTTGACACTTACTACAGTGGG
LOC_Os01g64270
Os.37904.1.S1_at--537--8051Chr01:37643036..37643060 (25 bp)
GGAGATGTAAATTCCCTGAGAGAAA
LOC_Os01g64270
Os.37904.1.S1_at--968--91Chr01:37643046..37643070 (25 bp)
ATTCCCTGAGAGAAATACATGATAC
LOC_Os01g64270
Target Sequence 
GCTGCTCTTCCAGGTTAGCTGCATGAAGCCATGAATGAATTNTTCAGCCTAACCGATGCGTATTCTNAATNAATTCCGAT
GCATTGCTGCGTTGACACTTACTACAGTGGGGGAACAGCCTCTGCCAAGGCGCCACCCTGCCGCTCCCGGTGCCCCTGAG
GGTGGACAAGGTGGAGGGCGGTGTCCGGCTAGGATTCATGGCGGTGGACGACGGCGTGACGCAGGTGCTGGTCTACATCG
ACTGCCTGGTGTCGCCGGCGACGGACGCCTCTGGGCCGGTATTCCGAGCGATCAGGAACGGTCCTATGAAGGACCAGGAG
CCACCTGGGGAGCCCAGGATCATGAGAAGCCTACTCGAGGCGCTCCAAAAATGTATCCAGTATGCACAAGTTTGAGTGTC
CAAGAGAGGCGATGCAAGCCCATTATCTGAAGAAACTTGGAATTCTAAATTGGAGATGTAAATTCCCTGAGAGAAATACA
TGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis