Browse Element(s) Details


Os.30881.1.S1_at

Description gb:AK120019.1
DB_XREF= gi:37989642
TID=Os.30881.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0679C12.29 (P0679C12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C01, full insert sequence.
FL= gb:AK120019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6429010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30881.1.S1_at--848--4631Chr01:37649757..37649781 (25 bp)
GCGTTGTCATCGTCACTAACCATGG
LOC_Os01g64290
Os.30881.1.S1_at--545--7052Chr01:37649768..37649792 (25 bp)
GTCACTAACCATGGCGACCGGATCT
LOC_Os01g64290
Os.30881.1.S1_at--694--4411Chr01:37649817..37649841 (25 bp)
GCCATGGTTGTCTGACAGTCGTGAG
LOC_Os01g64290
Os.30881.1.S1_at--772--1351Chr01:37649880..37649904 (25 bp)
AGAGAGAGTTCGAGCTTGTTGTCCT
LOC_Os01g64290
Os.30881.1.S1_at--801--2151Chr01:37649910..37649934 (25 bp)
ACACGGAGCTCGACGCTACCGATAC
LOC_Os01g64290
Os.30881.1.S1_at--446--4531Chr01:37649939..37649963 (25 bp)
GCCCTTCGCCTAGGAGTTCGTCGGG
LOC_Os01g64290
Os.30881.1.S1_at--205--451Chr01:37650173..37650197 (25 bp)
ATCTATGTCATCGTCCATGTTGCGT
LOC_Os01g64290
Os.30881.1.S1_at--1108--6673Chr10:13308976..13308997 (22 bp)
GTTGCGTGCCACGTAGACAAGACCA
NONE
Os.30881.1.S1_at--97--5611Chr01:37650206..37650230 (25 bp)
GACAAGACCACGATTAAACCAGACT
LOC_Os01g64290
Os.30881.1.S1_at--175--1353Chr11:15888946..15888966 (21 bp)
AGAGATCTTGATGTGTGTTTTGCAA
NONE
Os.30881.1.S1_at--1012--9771NONE
TAAGGACCGCTGATGCATTTTACCC
NONE
Target Sequence 
GCGTTGTCATCGTCACTAACCATGGCGACCGGATCTGGCGACCTCGCTGTCCTCGTCGCCGCCATGGTTGTCTGACAGTC
GTGAGGAGAGTGGAGAGAGCTCGAGCTTGCCGATGGAGAGGGGAGAGAGAGTTCGAGCTTGTTGTCCTCTGCCACACGGA
GCTCGACGCTACCGATACCGTCGCCCTTCGCCTAGGAGTTCGTCGGGGAGGAGAGAGGCGGCCCGATCTGCGCAGAGAGA
GAGAGAGAGAGAGAGAGAGGAAAGGCGACGCCACCAGGGATGGGAGAGGCGGCGCTGCCGCCGGTGGTGAGCGGAGTGGG
AGGGGAGGCGTCGGTGGCGTCAGGCCATCTCCGTCGGTGGGGAAAAGGAGGTGGGGAGGGGAGGAGAGGGGAAGAAGGAA
GAAAAAAAATAAAAAAAAATCTATGTCATCGTCCATGTTGCGTGCCACGTAGACAAGACCACGATTAAACCAGACTTTAG
ACCAAGATGATACAATAAACCACCAAGTTTAGAGATCTTGATGTGTGTTTTGCAAGTTTGTGGACCTAAGTGAAACCTCA
TTACAAGTTTAAGGACCGCTGATGCATTTTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis