Browse Element(s) Details


Os.20739.1.S1_s_at

Description gb:AK120353.1
DB_XREF= gi:37989976
TID=Os.20739.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.20739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066C10, full insert sequence.
FL= gb:AK102304.1 gb:AK120353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6428011/11sorting nexin 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20739.1.S1_s_at--209--6391Chr01:37643981..37644005 (25 bp)
GATCGAGCCAATGCTTTCAGGCAGC
LOC_Os01g64280
Os.20739.1.S1_s_at--1101--8251Chr01:37643962..37643986 (25 bp)
GGCAGCATCATGATTTATTTCAGCA
LOC_Os01g64280
Os.20739.1.S1_s_at--56--6691Chr01:37643654..37643678 (25 bp)
GTTCGTGAACCCTGATAAATTTTCT
LOC_Os01g64280
Os.20739.1.S1_s_at--617--8971Chr01:37643630..37643654 (25 bp)
TGAACTAGAAGCTGAGGTCCGAGAG
LOC_Os01g64280
Os.20739.1.S1_s_at--877--7791Chr01:37643522..37643639 (25 bp)
GGTCCGAGAGTTGACAGCAGACAGT
LOC_Os01g64280
Os.20739.1.S1_s_at--695--6691Chr01:37643316..37643340 (25 bp)
GTTCCACTTCATAAATGCTCCGTGT
LOC_Os01g64280
Os.20739.1.S1_s_at--110--8591Chr01:37643277..37643301 (25 bp)
TGGTTTAGTGGTTGACAATCGGCGA
LOC_Os01g64280
Os.20739.1.S1_s_at--410--3191Chr01:37643262..37643286 (25 bp)
CAATCGGCGAGTTTTAGGCTGTTTT
LOC_Os01g64280
Os.20739.1.S1_s_at--430--1791Chr01:37643218..37643242 (25 bp)
ACCGCGTCCTGTATACTTCAACTGA
LOC_Os01g64280
Os.20739.1.S1_s_at--118--211Chr01:37643155..37643179 (25 bp)
ATTTCCTGCCTGCTCTGTGTGTATC
LOC_Os01g64280
Os.20739.1.S1_s_at--1062--7391Chr01:37643139..37643163 (25 bp)
GTGTGTATCCTTCTTTTTACGACCA
LOC_Os01g64280
Target Sequence 
GATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAA
GTTCGTGAACCCTGATAAATTTTCTGAACTAGAAGCTGAGGTCCGAGAGTTGACAGCAGACAGTGAGGAGGCTACAAAGA
GGTTTGAGCACATAGTTGCAGTAATGAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATTGGATTCGCA
TTCCATGAATTTGCCAAAGGCCAAGCAAAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGA
AGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGTTTAGTGGTTGACAATCGGCGAGTTTTAGGCTG
TTTTTTCCCCAGGCCACCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATT
GACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20739.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis