Browse Element(s) Details


Os.34471.1.S1_at

Description gb:AK071274.1
DB_XREF= gi:32981297
TID=Os.34471.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAC-domain protein (P0423B08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087C18, full insert sequence.
FL= gb:AK071274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6431011/11NAC-domain containing protein 90, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein
LOC_Os01g64330Os.51661.1.S1_at11/111+37676295..37678921expressed protein
LOC_Os01g64340OsAffx.2400.1.S1_at11/111+37679112..37679516hypothetical protein
LOC_Os01g64350NANA1+37680929..37682222hypothetical protein
LOC_Os01g64360Os.49787.1.S1_at11/111+37685053..37686407Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g64370Os.12092.4.S1_at10/111+37687213..37690283expressed protein
LOC_Os01g64370Os.47736.1.S1_at1/111+37687213..37690283expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34471.1.S1_at--268--1971Chr01:37662459..37662483 (25 bp)
ACTGTACACCAGATCGGGAGGCATC
LOC_Os01g64310
Os.34471.1.S1_at--140--6211Chr01:37662476..37662500 (25 bp)
GAGGCATCCGGCAATTCGATCGGCG
LOC_Os01g64310
Os.34471.1.S1_at--144--5351Chr01:37662584..37662608 (25 bp)
GAAGTTCCATGCAGCAACTGGAGCT
LOC_Os01g64310
Os.34471.1.S1_at--909--3211Chr01:37662616..37662640 (25 bp)
CAAGGTGGCGCCGTTGATCCGGATT
LOC_Os01g64310
Os.34471.1.S1_at--316--5111Chr01:37662673..37662697 (25 bp)
GCACTTCTGTACTGGCCTAGAGATT
LOC_Os01g64310
Os.34471.1.S1_at--1161--2091Chr01:37662715..37662739 (25 bp)
ACATGATCTTGCTCGTAGTGCTAAC
LOC_Os01g64310
Os.34471.1.S1_at--580--1111Chr01:37662745..37662769 (25 bp)
AGTGCATGTTACACGTATCAACGAC
LOC_Os01g64310
Os.34471.1.S1_at--507--9151Chr01:37662798..37662822 (25 bp)
TGCCGCGCAAACTCTCCAGTATTAA
LOC_Os01g64310
Os.34471.1.S1_at--299--10311Chr01:37662916..37662940 (25 bp)
TTTCTAGTTGGATCTTCGCCCTTGG
LOC_Os01g64310
Os.34471.1.S1_at--532--6411Chr01:37662949..37662973 (25 bp)
GATCTCCTCCAACTTTTCTGATAAT
LOC_Os01g64310
Os.34471.1.S1_at--595--10171Chr01:37662984..37663008 (25 bp)
TATACTAGTTCATCCGTCACAAAAT
LOC_Os01g64310
Target Sequence 
ACTGTACACCAGATCGGGAGGCATCCGGCAATTCGATCGGCGGCCGCTAGCGGGTGGTGGTGATGAGAACCCGGGGCCAT
CCATGGCTGCCGCGGCGGCGTCACCCGAGGAAAACGACGGATCAGGAAGTTCCATGCAGCAACTGGAGCTGATGGATCAA
GGTGGCGCCGTTGATCCGGATTGGGACCAGTGGGACGACTTGGCCACCTTGACCGCACTTCTGTACTGGCCTAGAGATTA
GGGATGCCAATTGTTTACATGATCTTGCTCGTAGTGCTAACTGTGAAGTGCATGTTACACGTATCAACGACCAAGTGTAG
TACATGCTTTTTTTTCTTTTGCCGCGCAAACTCTCCAGTATTAACATAAGAAAAAAAAAATCAGAACACACACAATTTTT
TTTGGTTTCTCCAAATATAATTAATTAATTATTGTTTTCTTCAGTTAATCATATTTTTCTAGTTGGATCTTCGCCCTTGG
CCCTGTGGGATCTCCTCCAACTTTTCTGATAATAGGATTTGTTTATACTAGTTCATCCGTCACAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis