Browse Element(s) Details


Os.51661.1.S1_at

Description gb:AK063301.1
DB_XREF= gi:32973319
TID=Os.51661.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F03, full insert sequence.
FL= gb:AK063301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6433011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein
LOC_Os01g64330Os.51661.1.S1_at11/111+37676295..37678921expressed protein
LOC_Os01g64340OsAffx.2400.1.S1_at11/111+37679112..37679516hypothetical protein
LOC_Os01g64350NANA1+37680929..37682222hypothetical protein
LOC_Os01g64360Os.49787.1.S1_at11/111+37685053..37686407Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g64370Os.12092.4.S1_at10/111+37687213..37690283expressed protein
LOC_Os01g64370Os.47736.1.S1_at1/111+37687213..37690283expressed protein
LOC_Os01g64380OsAffx.2401.1.S1_at11/111+37692398..37692816expressed protein
LOC_Os01g64390OsAffx.23913.2.S1_at11/111+37703198..37703931hypothetical protein
LOC_Os01g64390OsAffx.23913.1.S1_at1/111+37703198..37703931hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51661.1.S1_at--653--10255Chr12:14565894..14565919 (25 bp)
TTTGTAATTTTTTCCCATCATCCAC
NONE
Os.51661.1.S1_at--553--3673Chr12:14552130..14552154 (25 bp)
CTTTATTGAGTTTTGGTCCGCTGTC
NONE
Os.51661.1.S1_at--358--7452Chr10:16210472..16210496 (25 bp)
GTGTCAGTGCTGGTTTTTGTTCTAG
NONE
Os.51661.1.S1_at--924--10552Chr10:16210491..16210515 (25 bp)
TTCTAGCTTCGTCTGGTTTGAGTTT
NONE
Os.51661.1.S1_at--741--6072Chr10:16210510..16210534 (25 bp)
GAGTTTTGCATCTTGGTTGCTCACT
NONE
Os.51661.1.S1_at--621--9692Chr10:16210530..16210554 (25 bp)
TCACTGCCTGTACGTTCGGTTGAAG
NONE
Os.51661.1.S1_at--682--9273Chr10:16210591..16210615 (25 bp)
TCCTGTGTTAGTGCATGCATGCCGT
NONE
Os.51661.1.S1_at--1106--272Chr10:16210704..16210728 (25 bp)
ATAGCAATTCCCAGTTTTTCTTCCT
NONE
Os.51661.1.S1_at--848--10392Chr10:16210728..16210752 (25 bp)
TTTTGAGCTGCCACGCGCAAATAGA
NONE
Os.51661.1.S1_at--594--3072Chr10:16210762..16210786 (25 bp)
AATCAAGATCGGTTCCCATATTCCT
NONE
Os.51661.1.S1_at--720--1012Chr10:16210804..16210828 (25 bp)
AGGTATCCATCGTTTTCTCTTGTGA
NONE
Target Sequence 
TTTGTAATTTTTTCCCATCATCCACTATACAGCCGCACCACTTTTTCCTTTACCAAACATTAGTTTTGAGCCTTGTAATT
TTCATTCAATTTTGCTTTATTGAGTTTTGGTCCGCTGTCGTGTCAGTGCTGGTTTTTGTTCTAGCTTCGTCTGGTTTGAG
TTTTGCATCTTGGTTGCTCACTGCCTGTACGTTCGGTTGAAGGAGAAGAAAACATTAGATCTGATCTTTTTTTCATCCTC
CTGTGTTAGTGCATGCATGCCGTGGAATTCTGGTACGTTACCAAGTAAATAGCGCGTGAAATTAGGAAGCTAATCGTGTT
TCAATATATCCGAAGTGCATGTGCCAAAAAAATAGCAATTCCCAGTTTTTCTTCCTTTTGAGCTGCCACGCGCAAATAGA
AAGTATATAAATCAAGATCGGTTCCCATATTCCTTGCGCCACAAAAATAGGAGGTATCCATCGTTTTCTCTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis