Browse Element(s) Details


OsAffx.2400.1.S1_at

Description tigr:9629.m06372
TID=OsAffx.2400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6434011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein
LOC_Os01g64330Os.51661.1.S1_at11/111+37676295..37678921expressed protein
LOC_Os01g64340OsAffx.2400.1.S1_at11/111+37679112..37679516hypothetical protein
LOC_Os01g64350NANA1+37680929..37682222hypothetical protein
LOC_Os01g64360Os.49787.1.S1_at11/111+37685053..37686407Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g64370Os.12092.4.S1_at10/111+37687213..37690283expressed protein
LOC_Os01g64370Os.47736.1.S1_at1/111+37687213..37690283expressed protein
LOC_Os01g64380OsAffx.2401.1.S1_at11/111+37692398..37692816expressed protein
LOC_Os01g64390OsAffx.23913.2.S1_at11/111+37703198..37703931hypothetical protein
LOC_Os01g64390OsAffx.23913.1.S1_at1/111+37703198..37703931hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2400.1.S1_at--119--3551Chr01:37679166..37679190 (25 bp)
CATCGCATTGCACGGTTCGGTGAGA
LOC_Os01g64340
OsAffx.2400.1.S1_at--1145--7891Chr01:37679179..37679203 (25 bp)
GGTTCGGTGAGACGAATCCGCAAAA
LOC_Os01g64340
OsAffx.2400.1.S1_at--911--2351Chr01:37679224..37679248 (25 bp)
AAACACCGCGGTTTCAGTCGGAGTG
LOC_Os01g64340
OsAffx.2400.1.S1_at--696--1131Chr01:37679245..37679269 (25 bp)
AGTGCGCTGTGCATTTGGCTGCTGT
LOC_Os01g64340
OsAffx.2400.1.S1_at--970--211Chr01:37679257..37679281 (25 bp)
ATTTGGCTGCTGTACCGCGGCATAT
LOC_Os01g64340
OsAffx.2400.1.S1_at--257--3951Chr01:37679274..37679298 (25 bp)
CGGCATATGGCGGTCTGTATCCCCG
LOC_Os01g64340
OsAffx.2400.1.S1_at--382--3211Chr01:37679377..37679401 (25 bp)
CACTTGTCAACCGTCCAGAAAATAT
LOC_Os01g64340
OsAffx.2400.1.S1_at--348--7451Chr01:37679416..37679440 (25 bp)
GTGGGCTCCCGGTGAAAGCTATTCA
LOC_Os01g64340
OsAffx.2400.1.S1_at--1018--5551Chr01:37679429..37679453 (25 bp)
GAAAGCTATTCAGGCCGTATATACG
LOC_Os01g64340
OsAffx.2400.1.S1_at--742--231Chr01:37679447..37679471 (25 bp)
ATATACGGTCCATGGGCTAATGCCT
LOC_Os01g64340
OsAffx.2400.1.S1_at--587--8291Chr01:37679461..37679485 (25 bp)
GGCTAATGCCTGTATCGGGCTCAAA
LOC_Os01g64340
Target Sequence 
CATCGCATTGCACGGTTCGGTGAGACGAATCCGCAAAAGGCGGGAGGAAAGCCAGGGGAAACACCGCGGTTTCAGTCGGA
GTGCGCTGTGCATTTGGCTGCTGTACCGCGGCATATGGCGGTCTGTATCCCCGCCGGTCCCGCATCGGATGTCGGCGGAA
TCGGCGCTACCGGAATCCCCAAAAGCCGCCCACCGGAAACAAAATGCCGCCCACTTGTCAACCGTCCAGAAAATATTTGC
TGCTGCTATGGTGGGCTCCCGGTGAAAGCTATTCAGGCCGTATATACGGTCCATGGGCTAATGCCTGTATCGGGCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis