Browse Element(s) Details


Os.49787.1.S1_at

Description gb:AK111571.1
DB_XREF= gi:37988234
TID=Os.49787.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071A13, full insert sequence.
FL= gb:AK111571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6436011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein
LOC_Os01g64330Os.51661.1.S1_at11/111+37676295..37678921expressed protein
LOC_Os01g64340OsAffx.2400.1.S1_at11/111+37679112..37679516hypothetical protein
LOC_Os01g64350NANA1+37680929..37682222hypothetical protein
LOC_Os01g64360Os.49787.1.S1_at11/111+37685053..37686407Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g64370Os.12092.4.S1_at10/111+37687213..37690283expressed protein
LOC_Os01g64370Os.47736.1.S1_at1/111+37687213..37690283expressed protein
LOC_Os01g64380OsAffx.2401.1.S1_at11/111+37692398..37692816expressed protein
LOC_Os01g64390OsAffx.23913.2.S1_at11/111+37703198..37703931hypothetical protein
LOC_Os01g64390OsAffx.23913.1.S1_at1/111+37703198..37703931hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_s_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64410OsAffx.23914.1.S1_at11/111+37708329..37709063uncharacterized plant-specific domain TIGR01568 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49787.1.S1_at--896--8371Chr01:37686086..37686110 (25 bp)
GGCGATGACGTGTACATTATATCCT
LOC_Os01g64360
Os.49787.1.S1_at--462--7651Chr01:37686124..37686148 (25 bp)
GGCAAGTAGTACTGTCAAACCGTTT
LOC_Os01g64360
Os.49787.1.S1_at--266--7591Chr01:37686157..37686181 (25 bp)
GGGCTCTCTGATCCATAACCGTGGA
LOC_Os01g64360
Os.49787.1.S1_at--549--8511Chr01:37686178..37686202 (25 bp)
TGGACGGCCTACTTGCCGGAAACAG
LOC_Os01g64360
Os.49787.1.S1_at--1157--4731Chr01:37686205..37686229 (25 bp)
GCTGTTGAGAGCTCCGGTCGGCACA
LOC_Os01g64360
Os.49787.1.S1_at--816--9431Chr01:37686222..37686246 (25 bp)
TCGGCACACGGTTTGGGCTTTAGGT
LOC_Os01g64360
Os.49787.1.S1_at--655--7571Chr01:37686236..37686260 (25 bp)
GGGCTTTAGGTTTTTCAGCATTAAT
LOC_Os01g64360
Os.49787.1.S1_at--532--6852Chr01:37686290..37686314 (25 bp)
GTTTGACGTGGCAACGTCGTGTCTA
LOC_Os01g64360
Os.49787.1.S1_at--665--7191Chr01:37686305..37686329 (25 bp)
GTCGTGTCTAGGTTTGGTTGATGCA
LOC_Os01g64360
Os.49787.1.S1_at--230--811Chr01:37686351..37686375 (25 bp)
ATGGGTTTTGTGCTTTTGTTTTGAT
LOC_Os01g64360
Os.49787.1.S1_at--211--6351Chr01:37686380..37686404 (25 bp)
GATGCTGTCGAAATCATTTTACATA
LOC_Os01g64360
Target Sequence 
GGCGATGACGTGTACATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGGGCTCTCT
GATCCATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGCTCCGGTCGGCACACGGTTTGGGCTTTAGG
TTTTTCAGCATTAATTAGGATTAGCTAAGTCAGGGACTAATGGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGA
TGCAGACGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTGATGAATGATGCTGTCGAAATCATTTTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis