Browse Element(s) Details


OsAffx.23913.3.S1_s_at

Description tigr:9629.m06378
TID=OsAffx.23913.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6440011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64350NANA1+37680929..37682222hypothetical protein
LOC_Os01g64360Os.49787.1.S1_at11/111+37685053..37686407Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g64370Os.12092.4.S1_at10/111+37687213..37690283expressed protein
LOC_Os01g64370Os.47736.1.S1_at1/111+37687213..37690283expressed protein
LOC_Os01g64380OsAffx.2401.1.S1_at11/111+37692398..37692816expressed protein
LOC_Os01g64390OsAffx.23913.2.S1_at11/111+37703198..37703931hypothetical protein
LOC_Os01g64390OsAffx.23913.1.S1_at1/111+37703198..37703931hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_s_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64410OsAffx.23914.1.S1_at11/111+37708329..37709063uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23913.3.S1_s_at--356--1291Chr01:37706844..37706868 (25 bp)
AGATGAACCAATGCATACATGGATC
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--837--5411Chr01:37706848..37706872 (25 bp)
GAACCAATGCATACATGGATCATCA
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--228--651Chr01:37706854..37706878 (25 bp)
ATGCATACATGGATCATCAAGTCAT
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--922--9591Chr01:37706867..37706891 (25 bp)
TCATCAAGTCATGGATACTCAAGTA
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--412--371Chr01:37706869..37706893 (25 bp)
ATCAAGTCATGGATACTCAAGTATG
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--533--7951Chr01:37706879..37706903 (25 bp)
GGATACTCAAGTATGAGGACAGTAC
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--336--6191Chr01:37706893..37706917 (25 bp)
GAGGACAGTACATACAGTGTCTTCC
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--818--2131Chr01:37706897..37706921 (25 bp)
ACAGTACATACAGTGTCTTCCTGGA
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--3--7031Chr01:37706900..37706924 (25 bp)
GTACATACAGTGTCTTCCTGGACAA
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--406--2091Chr01:37706902..37706926 (25 bp)
ACATACAGTGTCTTCCTGGACAATG
LOC_Os01g64400
OsAffx.23913.3.S1_s_at--900--331Chr01:37706904..37706928 (25 bp)
ATACAGTGTCTTCCTGGACAATGAG
LOC_Os01g64400
Target Sequence 
AGATGAACCAATGCATACATGGATCATCAAGTCATGGATACTCAAGTATGAGGACAGTACATACAGTGTCTTCCTGGACA
ATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23913.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis