Browse Element(s) Details


OsAffx.23914.1.S1_at

Description tigr:9629.m06379
TID=OsAffx.23914.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6441011/11uncharacterized plant-specific domain TIGR01568 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64360Os.49787.1.S1_at11/111+37685053..37686407Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g64370Os.12092.4.S1_at10/111+37687213..37690283expressed protein
LOC_Os01g64370Os.47736.1.S1_at1/111+37687213..37690283expressed protein
LOC_Os01g64380OsAffx.2401.1.S1_at11/111+37692398..37692816expressed protein
LOC_Os01g64390OsAffx.23913.2.S1_at11/111+37703198..37703931hypothetical protein
LOC_Os01g64390OsAffx.23913.1.S1_at1/111+37703198..37703931hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_s_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64410OsAffx.23914.1.S1_at11/111+37708329..37709063uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein
LOC_Os01g64450Os.36345.1.S1_at10/111+37733111..37734090Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23914.1.S1_at--477--10631Chr01:37708680..37708704 (25 bp)
TTCGACCCGGGAGCGTCGGCAACGA
LOC_Os01g64410
OsAffx.23914.1.S1_at--482--9451Chr01:37708695..37708719 (25 bp)
TCGGCAACGAGCTCCATACTGGAGG
LOC_Os01g64410
OsAffx.23914.1.S1_at--581--1911Chr01:37708795..37708819 (25 bp)
ACGTGGACTTCCGGGTGTCCATGGA
LOC_Os01g64410
OsAffx.23914.1.S1_at--1134--611Chr01:37708869..37708893 (25 bp)
ATGCTGGGATGGTACCTGCGAGCCA
LOC_Os01g64410
OsAffx.23914.1.S1_at--1125--6971Chr01:37708880..37708904 (25 bp)
GTACCTGCGAGCCAACGGCAAGGAC
LOC_Os01g64410
OsAffx.23914.1.S1_at--484--3211Chr01:37708898..37708922 (25 bp)
CAAGGACACGCACGCCGCCATATTG
LOC_Os01g64410
OsAffx.23914.1.S1_at--747--4431Chr01:37708914..37708938 (25 bp)
GCCATATTGGCGGCGTTCATCGACG
LOC_Os01g64410
OsAffx.23914.1.S1_at--561--9271Chr01:37708971..37708995 (25 bp)
TCCTGCTCGTCGCACCGGAGGAGCT
LOC_Os01g64410
OsAffx.23914.1.S1_at--547--971Chr01:37708989..37709013 (25 bp)
AGGAGCTCGACTTGCACGATCACGG
LOC_Os01g64410
OsAffx.23914.1.S1_at--204--9371Chr01:37708995..37709019 (25 bp)
TCGACTTGCACGATCACGGAGGAGT
LOC_Os01g64410
OsAffx.23914.1.S1_at--432--9031Chr01:37709001..37709025 (25 bp)
TGCACGATCACGGAGGAGTCGTCGT
LOC_Os01g64410
Target Sequence 
TTCGACCCGGGAGCGTCGGCAACGAGCTCCATACTGGAGGAGAAGTCGTCGGACGCCGCCGGCGAGGCCTCCTTCATCGG
CGGCGTGGCGGTGGCGTTCGAGTCGGAGGACCCGTACGTGGACTTCCGGGTGTCCATGGAGGAGATGGTGGTCGCGCACG
GGGTCGGCAACTGGGGCTGGCTGGAGGAGATGCTGGGATGGTACCTGCGAGCCAACGGCAAGGACACGCACGCCGCCATA
TTGGCGGCGTTCATCGACGTCATCGTCGCCATCGCCGACCCGGCCCTCGCGTCCTGCTCGTCGCACCGGAGGAGCTCGAC
TTGCACGATCACGGAGGAGTCGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis