Browse Element(s) Details


OsAffx.23913.1.S1_at

Description gb:NM_190726.1
DB_XREF= gi:34908535
GEN=P0423B08.17
TID=OsAffx.23913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0423B08.17 (P0423B08.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g643901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64330Os.51661.1.S1_at11/111+37676295..37678921expressed protein
LOC_Os01g64340OsAffx.2400.1.S1_at11/111+37679112..37679516hypothetical protein
LOC_Os01g64350NANA1+37680929..37682222hypothetical protein
LOC_Os01g64360Os.49787.1.S1_at11/111+37685053..37686407Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g64370Os.12092.4.S1_at10/111+37687213..37690283expressed protein
LOC_Os01g64370Os.47736.1.S1_at1/111+37687213..37690283expressed protein
LOC_Os01g64380OsAffx.2401.1.S1_at11/111+37692398..37692816expressed protein
LOC_Os01g64390OsAffx.23913.2.S1_at11/111+37703198..37703931hypothetical protein
LOC_Os01g64390OsAffx.23913.1.S1_at1/111+37703198..37703931hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_s_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64410OsAffx.23914.1.S1_at11/111+37708329..37709063uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23913.1.S1_at--199--1591Chr01:37703020..37703044 (25 bp)
AGCTGCACTACTACAGCGGCACGAC
NONE
OsAffx.23913.1.S1_at--1121--1831Chr01:37703040..37703062 (23 bp)
ACGACGCGCGGCTGTTTCAAAAGTA
NONE
OsAffx.23913.1.S1_at--614--9751Chr01:37703136..37703160 (25 bp)
TAATTTCCTGTGTTGGTCTGAGCGT
NONE
OsAffx.23913.1.S1_at--512--3391Chr01:37703163..37703187 (25 bp)
CAGCGAGCGCTGATCACGGCCTGGA
NONE
OsAffx.23913.1.S1_at--537--8091Chr01:37703185..37703209 (25 bp)
GGAGCCCTGGACAATGGCGCACAAT
NONE
OsAffx.23913.1.S1_at--144--6171Chr01:37703744..37703765 (22 bp)
GAGGATTTGTTTTTCACGCGACAGA
LOC_Os01g64390
OsAffx.23913.1.S1_at--1158--6691Chr01:37706309..37706333 (25 bp)
GTTCCCTGATACTTCAACAGTGAGC
NONE
OsAffx.23913.1.S1_at--103--5532Chr04:35123213..35123284 (25 bp)
GAAAACTTCTGTGCATCATCCATCC
NONE
OsAffx.23913.1.S1_at--705--3911Chr01:37706374..37706589 (25 bp)
CTGGCAAGGCGAATTTTACATGCTT
NONE
OsAffx.23913.1.S1_at--543--10471Chr01:37706580..37706604 (25 bp)
TTACATGCTTCGTGCTACAAGACCC
NONE
OsAffx.23913.1.S1_at--963--7791Chr01:37706605..37706629 (25 bp)
GGTCGTCTTTCCATCTGCAAGACAA
NONE
Target Sequence 
AGCTGCACTACTACAGCGGCACGACGCGCGGCTGTTTCAAAAGTAGTAGGGAGCAAGTAATAATTTCCTGTGTTGGTCTG
AGCGTAGCAGCGAGCGCTGATCACGGCCTGGAGCCCTGGACAATGGCGCACAATGCAATCATGGCGGAGAGGGCACTGCA
TGCGACCGATGCTGCATTGCTGCGGGTTAAAAAGTCCCTCGCTGTATCCAGGACATACAGGGAGAGAGAGGATTTGTTTT
TCACGCGACAGAGGAAGTATCGTGCAAAAAGTTTTAAGTTCCCTGATACTTCAACAGTGAGCTATTCTGAAAACTTCTGT
GCATCATCCATCCACCCTGCGACTGGCAAGGCGAATTTTACATGCTTCGTGCTACAAGACCCGGTCGTCTTTCCATCTGC
AAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis