Browse Element(s) Details


Os.12092.4.S1_at

Description gb:AK068967.1
DB_XREF= gi:32978991
TID=Os.12092.4
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423B08.14 (P0423B08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002B20, full insert sequence.
FL= gb:AK068967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6437010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein
LOC_Os01g64330Os.51661.1.S1_at11/111+37676295..37678921expressed protein
LOC_Os01g64340OsAffx.2400.1.S1_at11/111+37679112..37679516hypothetical protein
LOC_Os01g64350NANA1+37680929..37682222hypothetical protein
LOC_Os01g64360Os.49787.1.S1_at11/111+37685053..37686407Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g64370Os.12092.4.S1_at10/111+37687213..37690283expressed protein
LOC_Os01g64370Os.47736.1.S1_at1/111+37687213..37690283expressed protein
LOC_Os01g64380OsAffx.2401.1.S1_at11/111+37692398..37692816expressed protein
LOC_Os01g64390OsAffx.23913.2.S1_at11/111+37703198..37703931hypothetical protein
LOC_Os01g64390OsAffx.23913.1.S1_at1/111+37703198..37703931hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_s_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64410OsAffx.23914.1.S1_at11/111+37708329..37709063uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12092.4.S1_at--81--10171Chr01:37687630..37687654 (25 bp)
TATAACCGATTTTTGGCTTCCGTCA
LOC_Os01g64370
Os.12092.4.S1_at--584--4911Chr01:37687615..37687639 (25 bp)
GCTTCCGTCATCATTGGTTTTCTGG
LOC_Os01g64370
Os.12092.4.S1_at--312--8571Chr01:37687601..37687625 (25 bp)
TGGTTTTCTGGTGGTTCTTTCAAAT
LOC_Os01g64370
Os.12092.4.S1_at--923--8331Chr01:37687572..37687596 (25 bp)
GGCTGGACGTTGGTGGCACTATCAC
LOC_Os01g64370
Os.12092.4.S1_at--778--2491NONE
AAGTATTAGTTTGCTACAAGGCCAA
NONE
Os.12092.4.S1_at--183--9091Chr01:37687535..37687559 (25 bp)
TGCTACAAGGCCAATTCTATTTCTT
LOC_Os01g64370
Os.12092.4.S1_at--290--7851Chr01:37687298..37687322 (25 bp)
GGTACCATTGACAGTATTTTACGGA
LOC_Os01g64370
Os.12092.4.S1_at--522--9931Chr01:37687279..37687303 (25 bp)
TACGGAATTGCTTGTAAGAACGCCA
LOC_Os01g64370
Os.12092.4.S1_at--319--2751Chr01:37687264..37687288 (25 bp)
AAGAACGCCAGGTACCATTCTGTCT
LOC_Os01g64370
Os.12092.4.S1_at--507--7851Chr01:37687254..37687278 (25 bp)
GGTACCATTCTGTCTATCGTTCGAA
LOC_Os01g64370
Os.12092.4.S1_at--385--3691Chr01:37687241..37687265 (25 bp)
CTATCGTTCGAATTTGGAGCCCTTT
LOC_Os01g64370
Target Sequence 
TATAACCGATTTTTGGCTTCCGTCATCATTGGTTTTCTGGTGGTTCTTTCAAATTGGGGGCTGGACGTTGGTGGCACTAT
CACCAAAGTATTAGTTTGCTACAAGGCCAATTCTATTTCTTATTGTAACGAACATAACCATTGTCTTCACTTTGTTGATG
GAGAACANAGGACCCCAACGTGAGGGGTAGACCAGCTGGCAGCAACCTTGGTTCTGCTGATAACTTAGGCCAAATGCTAG
AGATTGGNGNTGCTNCTACAGAAAGCCCTGAGCACCCTCCTGATAGACTGCAGCGTTTGCGCTGTCATCATGATCTGTTT
TATTTGATTTTGAGGGGTACCATTGACAGTATTTTACGGAATTGCTTGTAAGAACGCCAGGTACCATTCTGTCTATCGTT
CGAATTTGGAGCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12092.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis