Browse Element(s) Details


Os.26850.1.A1_s_at

Description gb:AK072680.1
DB_XREF= gi:32982703
TID=Os.26850.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023135F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135F13, full insert sequence.
FL= gb:AK072680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6426211/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64210OsAffx.23911.1.S1_at11/111+37615221..37615706hypothetical protein
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26850.1.A1_s_at--302--7671Chr01:37638444..37638468 (25 bp)
GGGATTTTCAAAGTCTCTTTCAGAA
LOC_Os01g64262
Os.26850.1.A1_s_at--297--2931Chr01:37638398..37638422 (25 bp)
AAGGACAATGAACATGTGACATGGG
LOC_Os01g64262
Os.26850.1.A1_s_at--226--3491Chr01:37638362..37638386 (25 bp)
CAGGCTGCCATAGATATGTTTAATT
LOC_Os01g64262
Os.26850.1.A1_s_at--652--4871Chr01:37638131..37638155 (25 bp)
GCTATTGGACACTGCTTGAGAACCC
LOC_Os01g64262
Os.26850.1.A1_s_at--1039--4911Chr01:37638118..37638142 (25 bp)
GCTTGAGAACCCACCAAAGGGTTTG
LOC_Os01g64262
Os.26850.1.A1_s_at--398--3291Chr01:37638104..37638128 (25 bp)
CAAAGGGTTTGGACATCGCCATAGT
LOC_Os01g64262
Os.26850.1.A1_s_at--569--8531Chr01:37638095..37638119 (25 bp)
TGGACATCGCCATAGTGCAAGCAGA
LOC_Os01g64262
Os.26850.1.A1_s_at--918--4431Chr01:37638087..37638111 (25 bp)
GCCATAGTGCAAGCAGAGCTCAGTG
LOC_Os01g64262
Os.26850.1.A1_s_at--240--1351Chr01:37638013..37638037 (25 bp)
AGAGAGCAAGCCTGATGCTGGTAAA
LOC_Os01g64262
Os.26850.1.A1_s_at--1020--8451Chr01:37637962..37637986 (25 bp)
TGGCCATTGGGTTCATGTGGACAAT
LOC_Os01g64262
Os.26850.1.A1_s_at--1006--7671Chr01:37637954..37637978 (25 bp)
GGGTTCATGTGGACAATCCCAAGGG
LOC_Os01g64262
Target Sequence 
GGGATTTTCAAAGTCTCTTTCAGAATGGATTNGGAGCAACTTAAAAAAGGACAATGAACATGTGACATGGGCNTTTGATC
TTCAGGCTGCCATAGATATGTTTAATTCTTATAGAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTG
GACATCGCCATAGTGCAAGCAGAGCTCAGTGATAGATGGCTTTCTGATGATGTTCAGAGGCTAAAAGCGTTGTNTAGGAG
AGAGAGCAAGCCTGATGCTGGTAAAGTTTNTNTTCACGTTCTCCCCAACTNTGGCCATTGGGTTCATGTGGACAATCCCA
AGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26850.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis