Browse Element(s) Details


Os.46403.1.S1_at

Description gb:AK120797.1
DB_XREF= gi:37990420
TID=Os.46403.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012E09, full insert sequence.
FL= gb:AK120797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g699508/1150S ribosomal protein L27, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69930Os.54562.1.S1_at11/111+40765082..40769293DnaJ domain containing protein, expressed
LOC_Os01g69940Os.46432.1.S1_s_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69940Os.5554.1.S1_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46403.1.S1_at--726--891Chr01:40782442..40782466 (25 bp)
AGGCCCATGTTCAACTCATTGGTTA
LOC_Os01g69950
Os.46403.1.S1_at--72--2551Chr01:40782454..40782478 (25 bp)
AACTCATTGGTTAGTCCTGTTCGAC
LOC_Os01g69950
Os.46403.1.S1_at--675--7251Chr01:40782467..40782491 (25 bp)
GTCCTGTTCGACTTGTTGTATGCAT
LOC_Os01g69950
Os.46403.1.S1_at--321--3311Chr01:40782505..40782529 (25 bp)
CAGCTAGGCTTTAGGGACTAGGATG
LOC_Os01g69950
Os.46403.1.S1_at--807--5691Chr01:40782520..40782544 (25 bp)
GACTAGGATGGGTCTATTCCAGTAT
LOC_Os01g69950
Os.46403.1.S1_at--161--7691Chr01:40782528..40782552 (25 bp)
TGGGTCTATTCCAGTATTCCGGTAC
LOC_Os01g69950
Os.46403.1.S1_at--898--10211Chr01:40782534..40782558 (25 bp)
TATTCCAGTATTCCGGTACCACAAG
LOC_Os01g69950
Os.46403.1.S1_at--478--4231NONE
CCGGTACCACAAGTTCCACATAATT
NONE
Os.46403.1.S1_at--537--8651Chr01:40782589..40782613 (25 bp)
TGGGCTGATCTGATGCTTGAAAGTA
LOC_Os01g69950
Os.46403.1.S1_at--180--6331NONE
GATGCTTGAAAGTAGTGGTACTCAT
NONE
Os.46403.1.S1_at--137--7511NONE
GTGGTACTCATGTGGAATTGCAATT
NONE
Target Sequence 
AGGCCCATGTTCAACTCATTGGTTAGTCCTGTTCGACTTGTTGTATGCATNGNACCTTTCCTGGCAGCTAGGCTTTAGGG
ACTAGGATGGGTCTATTCCAGTATTCCGGTACCACAAGTTCCACATAATTGTGTTATGGGTGTTGTGGTGGGCTGATCTG
ATGCTTGAAAGTAGTGGTACTCATGTGGAATTGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis