Browse Element(s) Details


Os.12146.1.S1_at

Description gb:AK072037.1
DB_XREF= gi:32982060
TID=Os.12146.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106J07, full insert sequence.
FL= gb:AK072037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6998010/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA
LOC_Os01g69990Os.17442.1.S1_at10/111+40810155..40816509GYF domain containing protein, expressed
LOC_Os01g70000Os.55300.1.S1_at11/111+40820543..40822563expressed protein
LOC_Os01g70010OsAffx.11801.1.S1_at11/111+40822975..4082512860S ribosomal protein L7a, putative, expressed
LOC_Os01g70020Os.18596.1.S1_at11/111+40827996..40834366expressed protein
LOC_Os01g70020Os.50767.1.S1_x_at11/111+40827996..40834366expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009653biological_processmorphogenesis
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12146.1.S1_at--385--10473Chr04:26944849..26944873 (25 bp)
TTACTGTTGGGTTGTTCTTCATGGG
NONE
Os.12146.1.S1_at--967--2771Chr01:40805461..40805485 (25 bp)
AAGAGGCTACTACTTTGCTCCGGCG
LOC_Os01g69980
Os.12146.1.S1_at--467--2351Chr01:40805577..40805601 (25 bp)
AAAGCTCAATATTTCGCACTCGACA
LOC_Os01g69980
Os.12146.1.S1_at--409--10631Chr01:40805589..40805613 (25 bp)
TTCGCACTCGACAGTCAACACATGA
LOC_Os01g69980
Os.12146.1.S1_at--319--491Chr01:40805649..40805673 (25 bp)
ATCTGTGTTTGTGTTCATTTTTGCA
LOC_Os01g69980
Os.12146.1.S1_at--134--851Chr01:40805697..40805721 (25 bp)
ATGGACTGGATCATCGCTGTCGAGT
LOC_Os01g69980
Os.12146.1.S1_at--574--4071Chr01:40805806..40805830 (25 bp)
CGAGAGTGATGATCCGCTTATGTGC
LOC_Os01g69980
Os.12146.1.S1_at--224--311Chr01:40805836..40805860 (25 bp)
ATACGATGTCCGTCAAACTGATCCT
LOC_Os01g69980
Os.12146.1.S1_at--15--3351Chr01:40805865..40805889 (25 bp)
CACGGGCTGTTTCTGCAACGCAAAT
LOC_Os01g69980
Os.12146.1.S1_at--250--6231Chr01:40805910..40805934 (25 bp)
GAGGCCTGATTTTATATGCTTATTC
LOC_Os01g69980
Os.12146.1.S1_at--1070--6271NONE
GATGTTTCAAGGTTTCTCCTGATTT
NONE
Target Sequence 
TTACTGTTGGGTTGTTCTTCATGGGGNTTTTTATGTCTGATTTNTTTTCCTCGTGTGGTGTCGAAGCTCGAAAGAGGCTA
CTACTTTGCTCCGGCGACTTGTTGGGATGGATCATGATCATCTTCAGTTGNTTACTCCTGCTGCTCCATGGATGGTTNCC
GGTTTATCCCCCTCCAAGTGTTTAGGTGAAAGCTCAATATTTCGCACTCGACAGTCAACACATGACATGATCTTCGAAAG
GTTGCTTGATGAGCTTATGTATCTGTGTTTGTGTTCATTTTTGCAGGTGTATAATAGCCGAGAGCTGGATGGACTGGATC
ATCGCTGTCGAGTGAGTGCNTTATTTGTTATTGCAGGTCGTTGTGTAGATATTCAGGTATTTTTGCAGTTAGAGAGGTCT
TCTTTTTTTCCTTTTTACGAGAGTGATGATCCGCTTATGTGCNGACAAATACGATGTCCGTCAAACTGATCCTCACCCAC
GGGCTGTTTCTGCAACGCAAATATGATGCATATACATTTTTAGAGGCCTGATTTTATATGCTTATTCTTTTGTGGNATGT
TGTATGATGTTTCAAGGTTTCTCCTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis