Browse Element(s) Details


OsAffx.11801.1.S1_at

Description tigr:9629.m06912
TID=OsAffx.11801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=60s ribosomal protein l7a
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7001011/1160S ribosomal protein L7a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA
LOC_Os01g69990Os.17442.1.S1_at10/111+40810155..40816509GYF domain containing protein, expressed
LOC_Os01g70000Os.55300.1.S1_at11/111+40820543..40822563expressed protein
LOC_Os01g70010OsAffx.11801.1.S1_at11/111+40822975..4082512860S ribosomal protein L7a, putative, expressed
LOC_Os01g70020Os.18596.1.S1_at11/111+40827996..40834366expressed protein
LOC_Os01g70020Os.50767.1.S1_x_at11/111+40827996..40834366expressed protein
LOC_Os01g70030NANA1+40840606..40845440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g70040NANA1+40848049..40851294transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11801.1.S1_at--406--5851Chr01:40823871..40823895 (25 bp)
GACCATGTGACCTATTTGATTGAAC
LOC_Os01g70010
OsAffx.11801.1.S1_at--198--8251Chr01:40823714..40823738 (25 bp)
GGCACAGCTTGTGGTCATTGCTCAT
LOC_Os01g70010
OsAffx.11801.1.S1_at--992--4811Chr01:40823695..40823719 (25 bp)
GCTCATGATGTCGACCCCATTGAAC
LOC_Os01g70010
OsAffx.11801.1.S1_at--822--1691Chr01:40823682..40823706 (25 bp)
ACCCCATTGAACTCGTCGTTTGGCT
LOC_Os01g70010
OsAffx.11801.1.S1_at--464--6871Chr01:40823665..40823689 (25 bp)
GTTTGGCTCCCAGCCTTGTGCAGGA
LOC_Os01g70010
OsAffx.11801.1.S1_at--1047--912Chr01:4645095..4645118 (23 bp)
AGGCTCGTCTTGGATCGATTGTGCA
NONE
OsAffx.11801.1.S1_at--647--2151Chr01:40823471..40823495 (25 bp)
ACAGCATCTGTCCTTTGTCTGACGA
LOC_Os01g70010
OsAffx.11801.1.S1_at--35--3611Chr01:40823315..40823433 (25 bp)
CTTGGAGGCCATTAAGTCAAACTTC
LOC_Os01g70010
OsAffx.11801.1.S1_at--1096--7831Chr01:40823251..40823275 (25 bp)
GGTATCATGGGCTCAAAGTCACAAG
LOC_Os01g70010
OsAffx.11801.1.S1_at--431--2031Chr01:40823164..40823188 (25 bp)
ACTAGCCTGAAATTTTGCGTTGTGG
LOC_Os01g70010
OsAffx.11801.1.S1_at--1105--7391Chr01:40823120..40823144 (25 bp)
GTGATCTTATAACTTCGGTCTGCAA
LOC_Os01g70010
Target Sequence 
GACCATGTGACCTATTTGATTGAACAGAGCAAGGCACAGCTTGTGGTCATTGCTCATGATGTCGACCCCATTGAACTCGT
CGTTTGGCTCCCAGCCTTGTGCAGGAAGATGGAAATCCCTTATTGCATTGTGAAGGGAAAGGCTCGTCTTGGATCGATTG
TGCACAAGAAGACAGCATCTGTCCTTTGTCTGACGACTGTGAAGAATGAAGACAAGTTGGAGTTCAGCAAAATCTTGGAG
GCCATTAAGTCAAACTTCAACGACAAGTTCGATGAGGTCAGGAAGAAGTGGGGTGGTGGTATCATGGGCTCAAAGTCACA
AGCCAAGACCAAAGCCAGGGAAAAGCTTCTAGCCAAGGAAGCTGCCCAGAGGATGACCTAAAGAACTAGCCTGAAATTTT
GCGTTGTGGTTGTTACTAGGAACACATTGTGATCTTATAACTTCGGTCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis