Browse Element(s) Details


Os.17442.1.S1_at

Description gb:AK060620.1
DB_XREF= gi:32970638
TID=Os.17442.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D02, full insert sequence.
FL= gb:AK060620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6999010/11GYF domain containing protein, expressed
LOC_Os07g123301/11Tryptophan/tyrosine permease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA
LOC_Os01g69990Os.17442.1.S1_at10/111+40810155..40816509GYF domain containing protein, expressed
LOC_Os01g70000Os.55300.1.S1_at11/111+40820543..40822563expressed protein
LOC_Os01g70010OsAffx.11801.1.S1_at11/111+40822975..4082512860S ribosomal protein L7a, putative, expressed
LOC_Os01g70020Os.18596.1.S1_at11/111+40827996..40834366expressed protein
LOC_Os01g70020Os.50767.1.S1_x_at11/111+40827996..40834366expressed protein
LOC_Os01g70030NANA1+40840606..40845440transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0005302molecular_functionL-tyrosine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17442.1.S1_at--641--2791Chr01:40810730..40810754 (25 bp)
AAGAGGCAGGCTCTTTCATCTCGCC
LOC_Os01g69990
Os.17442.1.S1_at--602--951Chr01:40810702..40810726 (25 bp)
AGGAACAAGCGTCGATGGTCCGTCC
LOC_Os01g69990
Os.17442.1.S1_at--986--811Chr01:40810688..40810712 (25 bp)
ATGGTCCGTCCTTCAGGGAAATGGT
LOC_Os01g69990
Os.17442.1.S1_at--964--6911Chr01:40810633..40810657 (25 bp)
GTATGATGCCTCTGAATCTGCAGAT
LOC_Os01g69990
Os.17442.1.S1_at--245--5531Chr01:40810565..40810589 (25 bp)
GAAAACAGATTGACCCGTCTCTTCT
LOC_Os01g69990
Os.17442.1.S1_at--16--10851Chr01:40810541..40810565 (25 bp)
TTGGCTTCAAGGTCCACAGCAACCG
LOC_Os01g69990
Os.17442.1.S1_at--226--811Chr01:40810509..40810533 (25 bp)
ATGGGTGAGATTCATCGCCTTGATG
LOC_Os01g69990
Os.17442.1.S1_at--621--4552Chr07:6952010..6952029 (20 bp)
GCGCCATTTTGTGTTGTGTACATGT
LOC_Os07g12330
Os.17442.1.S1_at--152--7031Chr01:40810449..40810473 (25 bp)
GTACATGTTCATCTCTTTGTAGCGA
LOC_Os01g69990
Os.17442.1.S1_at--1081--7491Chr01:40810257..40810281 (25 bp)
GTGGTGCCCTCAGGTTTTTACAGGA
LOC_Os01g69990
Os.17442.1.S1_at--1132--9751Chr01:40810155..40810179 (25 bp)
TAATCGATGGTCTCTCTTCCAAGTT
NONE
Target Sequence 
AAGAGGCAGGCTCTTTCATCTCGCCATCAGGAACAAGCGTCGATGGTCCGTCCTTCAGGGAAATGGTGAAGAGCACGAAG
AAGCCGGCATTGCAGCAGTATGATGCCTCTGAATCTGCAGATGGTGGCCCGGGCGGCAAGGGTGCAAAGAAGAAAACGAA
GAAAGGAAAACAGATTGACCCGTCTCTTCTTGGCTTCAAGGTCCACAGCAACCGCATCATGATGGGTGAGATTCATCGCC
TTGATGATTAACATGCATCTCTANGCGCCATTTTGTGTTGTGTACATGTTCATCTCTTTGTAGCGATGCAGAAATTTTGT
AAACATTGCTGTGGAGAAGATCATGACTCCCACCCCCTTTTTCACCCCTCCCTCCCACCTTTGTTCATTCCTTTAGCCAT
AGGATACAGAATTAGTCAGAAGATGAAATTAGGGAGGATTTGTCTTTCTTTTTCTTTCCNCCCCTTGTGTATCTGTGGTG
CCCTCAGGTTTTTACAGGAGAGATTGTACAGGACAGTGCNAAATGGTCAGCATGTTTGTAGGGTTCTTATTTTTTTTGAA
GGACTTTTTGTCCTTTTAATCGATGGTCTCTCTTCCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis