Browse Element(s) Details


Os.55300.1.S1_at

Description gb:AK107827.1
DB_XREF= gi:32993036
TID=Os.55300.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-G08, full insert sequence.
FL= gb:AK107827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7000011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA
LOC_Os01g69990Os.17442.1.S1_at10/111+40810155..40816509GYF domain containing protein, expressed
LOC_Os01g70000Os.55300.1.S1_at11/111+40820543..40822563expressed protein
LOC_Os01g70010OsAffx.11801.1.S1_at11/111+40822975..4082512860S ribosomal protein L7a, putative, expressed
LOC_Os01g70020Os.18596.1.S1_at11/111+40827996..40834366expressed protein
LOC_Os01g70020Os.50767.1.S1_x_at11/111+40827996..40834366expressed protein
LOC_Os01g70030NANA1+40840606..40845440transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55300.1.S1_at--100--9951Chr01:40820957..40820981 (25 bp)
TACGCTCCGCTGGATGGCATGGTCG
LOC_Os01g70000
Os.55300.1.S1_at--928--791Chr01:40820975..40820999 (25 bp)
ATGGTCGTCGACAACCCTCTACTGG
LOC_Os01g70000
Os.55300.1.S1_at--176--10811Chr01:40822136..40822160 (25 bp)
TTGTACATGGCTACGACGGTGCTTC
LOC_Os01g70000
Os.55300.1.S1_at--285--1931Chr01:40822151..40822175 (25 bp)
ACGGTGCTTCTCTACATTTTTGGCA
LOC_Os01g70000
Os.55300.1.S1_at--70--191Chr01:40822166..40822190 (25 bp)
ATTTTTGGCATGGTTACTGCTCTCA
LOC_Os01g70000
Os.55300.1.S1_at--946--6771Chr01:40822178..40822202 (25 bp)
GTTACTGCTCTCAAGGAATACGAAT
LOC_Os01g70000
Os.55300.1.S1_at--1061--311Chr01:40822195..40822219 (25 bp)
ATACGAATTGTTAGTGCCACTGTCC
LOC_Os01g70000
Os.55300.1.S1_at--929--2851Chr01:40822373..40822397 (25 bp)
AAGTGTGCCTAAGCAGGGTTCTTCA
LOC_Os01g70000
Os.55300.1.S1_at--998--5011Chr01:40822385..40822409 (25 bp)
GCAGGGTTCTTCAAGTTTATCATAA
LOC_Os01g70000
Os.55300.1.S1_at--534--5591Chr01:40822424..40822448 (25 bp)
GAAATAGGCCACTTCTAGTTGCCGT
LOC_Os01g70000
Os.55300.1.S1_at--808--9531Chr01:40822437..40822461 (25 bp)
TCTAGTTGCCGTCTTCTTTAGAAGA
LOC_Os01g70000
Target Sequence 
TACGCTCCGCTGGATGGCATGGTCGTCGACAACCCTCTACTGGCCGCCCTCATCCGAGCTGTTTACACCTTGTACATGGC
TACGACGGTGCTTCTCTACATTTTTGGCATGGTTACTGCTCTCAAGGAATACGAATTGTTAGTGCCACTGTCCATAATTG
TAGTCATGCAGCCCTTCTTCATATTGATGTGGATTGCAGCACCATTCCTTAGGACTGTAGCAATTGTGAAATATGCGATG
GGGCTCCCTGATGGTAACAACGTCAACAGAATTCCAACAGGAAGGATGTCAGCCCTAGCCTAAACAAAGTGTGCCTAAGC
AGGGTTCTTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGCCACTTCTAGTTGCCGTCTTCTTTAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis