Browse Element(s) Details


Os.46441.1.S1_at

Description gb:AK120098.1
DB_XREF= gi:37989721
TID=Os.46441.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022E11, full insert sequence.
FL= gb:AK120098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5071511/11hypothetical protein
LOC_Os06g5054811/11hypothetical protein
LOC_Os06g5067911/11hypothetical protein
LOC_Os06g505106/11START domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50659NANA6+30663228..30663914hypothetical protein
LOC_Os06g50670Os.8311.1.S1_a_at3/116+30665883..30667360expressed protein
LOC_Os06g50679Os.46441.1.S1_at11/116+30669940..30671514hypothetical protein
LOC_Os06g50679OsAffx.5159.1.S1_at1/116+30669940..30671514hypothetical protein
LOC_Os06g50688NANA6+30671792..30675336hypothetical protein
LOC_Os06g50697NANA6+30679329..30679929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50706Os.8311.1.S1_a_at11/116+30681418..30683899expressed protein
LOC_Os06g50715Os.46441.1.S1_at11/116+30685425..30686999hypothetical protein
LOC_Os06g50715OsAffx.5159.1.S1_at1/116+30685425..30686999hypothetical protein
LOC_Os06g50724NANA6+30687277..30690821hypothetical protein
LOC_Os06g50733NANA6+30694832..30695432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50742Os.8311.1.S1_a_at3/116+30696921..30698348hypothetical protein
LOC_Os06g50760NANA6+30705867..30706325transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0009733biological_processresponse to auxin stimulus
GO:0009855biological_processdetermination of bilateral symmetry
GO:0009887biological_processorgan morphogenesis
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009955biological_processadaxial/abaxial pattern formation
GO:0009956biological_processradial pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010014biological_processmeristem initiation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010073biological_processmeristem maintenance
GO:0010075biological_processregulation of meristem size
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0010089biological_processxylem histogenesis
GO:0030154biological_processcell differentiation
GO:0045597biological_processpositive regulation of cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46441.1.S1_at--1003--9014Chr06:30582020..30582044 (25 bp)
TGCAAATCTGTGGTTCATCTCTAAA
LOC_Os06g50510
Os.46441.1.S1_at--249--3013Chr06:30685849..30685873 (25 bp)
AATGACTGGGTAAGCTCTCTGGTCC
LOC_Os06g50715
Os.46441.1.S1_at--729--7793Chr06:30685829..30685853 (25 bp)
GGTCCTCCCATGTCCTTGACAATAA
LOC_Os06g50715
Os.46441.1.S1_at--81--9574Chr06:30582122..30582146 (25 bp)
TCTTCATTCTCACAGGTAAGTCTTG
LOC_Os06g50510
Os.46441.1.S1_at--748--3654Chr06:30582155..30582179 (25 bp)
CTTCTATTTGTGCTAGCCTTGATGT
LOC_Os06g50510
Os.46441.1.S1_at--1134--4854Chr06:30582166..30582190 (25 bp)
GCTAGCCTTGATGTTAAGTCTGCAT
LOC_Os06g50510
Os.46441.1.S1_at--215--7174Chr06:30582183..30582207 (25 bp)
GTCTGCATTTATAACGGTACTCTCT
LOC_Os06g50510
Os.46441.1.S1_at--93--7834Chr06:30582198..30582222 (25 bp)
GGTACTCTCTTGAGTTTCTAAACTA
LOC_Os06g50510
Os.46441.1.S1_at--1110--7753Chr06:30685651..30685675 (25 bp)
GGTGATGCCTGGTAAGTCTTGTAAT
LOC_Os06g50715
Os.46441.1.S1_at--914--7073Chr06:30685631..30685655 (25 bp)
GTAATTCATCACAGGTAAGTCTTGT
LOC_Os06g50715
Os.46441.1.S1_at--977--3553Chr06:30685602..30685626 (25 bp)
CATCTTCTATTTGCTGCACTGGTGA
LOC_Os06g50715
Target Sequence 
TGCAAATCTGTGGTTCATCTCTAAATTGTAATGACTGGGTAAGCTCTCTGGTCCTCCCATGTCCTTGACAATAACAGTAA
TATCCTTCAACTTTTCAACTTATCTTCATTCTCACAGGTAAGTCTTGTAATTCATCTTCTATTTGTGCTAGCCTTGATGT
TAAGTCTGCATTTATAACGGTACTCTCTTGAGTTTCTAAACTAACTTCATCAATGGATTATTTGACAGGTGATGCCTGGT
AAGTCTTGTAATTCATCACAGGTAAGTCTTGTAATTCATCTTCTATTTGCTGCACTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis