Browse Element(s) Details


Os.46486.1.S1_at

Description gb:AK071861.1
DB_XREF= gi:32981884
TID=Os.46486.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123I12, full insert sequence.
FL= gb:AK071861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3902011/11fringe protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38970Os.10203.1.S1_at11/1110+20438807..20447653expressed protein
LOC_Os10g38980Os.26772.1.S1_x_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.3.S1_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.2.S1_at2/1110+20449932..20453909expressed protein
LOC_Os10g39000Os.46884.1.S1_at11/1110+20456755..20458158expressed protein
LOC_Os10g39010Os.10505.1.S1_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S2_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S1_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39020Os.46486.1.S1_at11/1110+20466642..20469079fringe protein, putative, expressed
LOC_Os10g39030Os.17301.1.S1_at11/1110+20472065..20476769Associated with HOX family protein, expressed
LOC_Os10g39044NANA10+20482695..20484015hypothetical protein
LOC_Os10g39060OsAffx.30717.1.S1_at11/1110+20493681..20494537hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46486.1.S1_at--121--8391Chr10:20467109..20467133 (25 bp)
GGCGAGTTCGCCAAGCTTTAATTAG
LOC_Os10g39020
Os.46486.1.S1_at--194--5331Chr10:20466900..20466924 (25 bp)
GAAGTTAATCCACTGGGACCGAGTA
LOC_Os10g39020
Os.46486.1.S1_at--218--8111Chr10:20466885..20466909 (25 bp)
GGACCGAGTAATAGCTCATTAGCAT
LOC_Os10g39020
Os.46486.1.S1_at--500--151Chr10:20466868..20466892 (25 bp)
ATTAGCATTAGATCGCCACACGGCG
LOC_Os10g39020
Os.46486.1.S1_at--327--791Chr10:20466843..20466867 (25 bp)
ATGTGTTGTTTAATTAGCGCGGCGG
LOC_Os10g39020
Os.46486.1.S1_at--927--1811Chr10:20466806..20466830 (25 bp)
ACGCCGGGACTATTTTGATCTCTTC
LOC_Os10g39020
Os.46486.1.S1_at--60--8851Chr10:20466791..20466815 (25 bp)
TGATCTCTTCACTAGTTCACTTACA
LOC_Os10g39020
Os.46486.1.S1_at--97--10491Chr10:20466771..20466795 (25 bp)
TTACATATTGAACCAACTCACCCAC
LOC_Os10g39020
Os.46486.1.S1_at--322--10291Chr10:20466730..20466754 (25 bp)
TTTGCCTTTTCCTCTGCTGAGCAGA
LOC_Os10g39020
Os.46486.1.S1_at--44--2411Chr10:20466695..20466719 (25 bp)
AAACAGCCGGAGTTTCACAAATCTT
LOC_Os10g39020
Os.46486.1.S1_at--692--2191Chr10:20466679..20466703 (25 bp)
ACAAATCTTGTGTGGTGTCAGAACG
LOC_Os10g39020
Target Sequence 
GGCGAGTTCGCCAAGCTTTAATTAGTAGCGGGATTAATTAGGAGAGGAGAAGAGGGATTAGCGGCGGCAGAAGAGGTCCC
GGGCAAAAGAGAGGATGGAGATTAACGACCAGAAGTTAATCCACTGGGACCGAGTAATAGCTCATTAGCATTAGATCGCC
ACACGGCGATGTGTTGTTTAATTAGCGCGGCGGGTGTAAGCATGCACGCCGGGACTATTTTGATCTCTTCACTAGTTCAC
TTACATATTGAACCAACTCACCCACGAACCGGGGCTTTTTTTTTGCCTTTTCCTCTGCTGAGCAGAGCAGGAGAGGAAAC
AGCCGGAGTTTCACAAATCTTGTGTGGTGTCAGAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis