Browse Element(s) Details


OsAffx.30717.1.S1_at

Description tigr:9638.m03521
TID=OsAffx.30717.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3906011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39020Os.46486.1.S1_at11/1110+20466642..20469079fringe protein, putative, expressed
LOC_Os10g39030Os.17301.1.S1_at11/1110+20472065..20476769Associated with HOX family protein, expressed
LOC_Os10g39044NANA10+20482695..20484015hypothetical protein
LOC_Os10g39060OsAffx.30717.1.S1_at11/1110+20493681..20494537hypothetical protein
LOC_Os10g39070OsAffx.20169.1.S1_at11/1110+20495449..20497585retrotransposon protein, putative, LINE subclass
LOC_Os10g39080Os.56717.1.S1_at3/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39080OsAffx.30486.1.S1_at1/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39084OsAffx.7944.1.S1_x_at8/1110+20503845..20504176hypothetical protein
LOC_Os10g39090Os.55991.1.S1_s_at11/1110+20507751..20509331expressed protein
LOC_Os10g39090Os.55991.1.S1_at11/1110+20507751..20509331expressed protein
LOC_Os10g39100Os.46418.1.S1_at11/1110+20513152..20515234Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g39110OsAffx.18574.1.S1_x_at11/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39110OsAffx.22609.1.S1_x_at1/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39120Os.9019.1.S1_at11/1110+20518225..20521635Ubiquitin-conjugating enzyme E2 I, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30717.1.S1_at--929--3591Chr10:20493734..20493758 (25 bp)
CATTCTCGAGGTGCGTATTCTGGAT
LOC_Os10g39060
OsAffx.30717.1.S1_at--173--8391Chr10:20493830..20493854 (25 bp)
GGCGCAGCAGCCAGGCAATGTCAAT
LOC_Os10g39060
OsAffx.30717.1.S1_at--637--10551Chr10:20493864..20493888 (25 bp)
TTCTTGCAGGCTTCGAGGAGGCTGA
LOC_Os10g39060
OsAffx.30717.1.S1_at--438--6291Chr10:20493905..20493929 (25 bp)
GATGTTGTGGATGCGTATGCTTCTC
LOC_Os10g39060
OsAffx.30717.1.S1_at--896--631Chr10:20493921..20493945 (25 bp)
ATGCTTCTCAGGCAGCTGGTCGTGA
LOC_Os10g39060
OsAffx.30717.1.S1_at--56--4671Chr10:20493958..20493982 (25 bp)
GCGTGCATTTCAGGCGGTTCATGTG
LOC_Os10g39060
OsAffx.30717.1.S1_at--146--4711Chr10:20494008..20494032 (25 bp)
GCTCGGGTTCGTCTGTTTCTTTGGA
LOC_Os10g39060
OsAffx.30717.1.S1_at--819--8531Chr10:20494029..20494053 (25 bp)
TGGAGGATTCGGCATGACCACCTTG
LOC_Os10g39060
OsAffx.30717.1.S1_at--891--7131Chr10:20494053..20494077 (25 bp)
GTCTACATCTTGGACACCATCATGG
LOC_Os10g39060
OsAffx.30717.1.S1_at--653--3491Chr10:20494073..20494097 (25 bp)
CATGGTTTTGGCATACGTCGTATTC
LOC_Os10g39060
OsAffx.30717.1.S1_at--530--4411Chr10:20494107..20494131 (25 bp)
GCCAGCTTCATAGGCTACATCGAAT
LOC_Os10g39060
Target Sequence 
CATTCTCGAGGTGCGTATTCTGGATGAGGCGTGGCTGCGAGGGGGCTTGTGGTGGAGGAGGGGGATCCGGGGGGAGCAGG
GGTTAGCCATGGCGATGGCGCAGCAGCCAGGCAATGTCAATGTGGCTGGGTTCTTGCAGGCTTCGAGGAGGCTGAGGAAT
CGGGTGATCATGATGTTGTGGATGCGTATGCTTCTCAGGCAGCTGGTCGTGAGATGGTGGCTGCGCGTGCATTTCAGGCG
GTTCATGTGGGTGTGGCATCTGCGGGTTCTTCGGGCTCGGGTTCGTCTGTTTCTTTGGAGGATTCGGCATGACCACCTTG
TCTACATCTTGGACACCATCATGGTTTTGGCATACGTCGTATTCAAGATCAATGCCAGCTTCATAGGCTACATCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis