Browse Element(s) Details


Os.55991.1.S1_s_at

Description gb:AK109098.1
DB_XREF= gi:32994307
TID=Os.55991.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A11, full insert sequence.
FL= gb:AK109098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3909011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39044NANA10+20482695..20484015hypothetical protein
LOC_Os10g39060OsAffx.30717.1.S1_at11/1110+20493681..20494537hypothetical protein
LOC_Os10g39070OsAffx.20169.1.S1_at11/1110+20495449..20497585retrotransposon protein, putative, LINE subclass
LOC_Os10g39080Os.56717.1.S1_at3/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39080OsAffx.30486.1.S1_at1/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39084OsAffx.7944.1.S1_x_at8/1110+20503845..20504176hypothetical protein
LOC_Os10g39090Os.55991.1.S1_s_at11/1110+20507751..20509331expressed protein
LOC_Os10g39090Os.55991.1.S1_at11/1110+20507751..20509331expressed protein
LOC_Os10g39100Os.46418.1.S1_at11/1110+20513152..20515234Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g39110OsAffx.18574.1.S1_x_at11/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39110OsAffx.22609.1.S1_x_at1/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39120Os.9019.1.S1_at11/1110+20518225..20521635Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os10g39130Os.37813.1.S1_at10/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39130Os.16010.1.S1_at1/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55991.1.S1_s_at--790--7791Chr10:20508677..20508701 (25 bp)
GGTCGGTGTCCTACGTGCTGGCCAA
LOC_Os10g39090
Os.55991.1.S1_s_at--891--8131Chr10:20508602..20508626 (25 bp)
GGAAGGGCCCGGAGCCCATGCTCCT
LOC_Os10g39090
Os.55991.1.S1_s_at--408--631Chr10:20508585..20508609 (25 bp)
ATGCTCCTGCTGTCGGTTGCGCTCG
LOC_Os10g39090
Os.55991.1.S1_s_at--828--4791Chr10:20508505..20508529 (25 bp)
GCTCGTCTACCGGATCGACGTCGAG
LOC_Os10g39090
Os.55991.1.S1_s_at--511--7551Chr10:20508047..20508071 (25 bp)
GGGCCATCAAACAAAGCAGTGTAGT
LOC_Os10g39090
Os.55991.1.S1_s_at--516--1531Chr10:20508033..20508057 (25 bp)
AGCAGTGTAGTGTCTGAGTCTGACA
LOC_Os10g39090
Os.55991.1.S1_s_at--6--6111Chr10:20508018..20508042 (25 bp)
GAGTCTGACATTGTGAGAAGATACA
LOC_Os10g39090
Os.55991.1.S1_s_at--437--6471Chr10:20507999..20508023 (25 bp)
GATACACGTATACAGATACACAGAT
LOC_Os10g39090
Os.55991.1.S1_s_at--28--3211Chr10:20507890..20507914 (25 bp)
CAAGTGAATCATACGTACATTGTAA
LOC_Os10g39090
Os.55991.1.S1_s_at--659--651Chr10:20507863..20507887 (25 bp)
ATGAAACAGTCTCTTCGTAGTTCGG
LOC_Os10g39090
Os.55991.1.S1_s_at--226--5511Chr10:20507832..20507856 (25 bp)
GAAAATGCATTTGCAGGACGAGCCG
LOC_Os10g39090
Target Sequence 
GGTCGGTGTCCTACGTGCTGGCCAAGGCCGCCGCCGCCGTGCTCCCGCGCCGCGGCGTCGCGCCGGCACCGGAGGGGAAG
GGCCCGGAGCCCATGCTCCTGCTGTCGGTTGCGCTCGCCGCCGCGCACCTCGCCGTCGCGTACCGCACCAGCTGCCGCGA
GCGCCGCCGCCTGCTCGTCTACCGGATCGACGTCGAGGCGGTTAAAAGGGGGCCATCAAACAAAGCAGTGTAGTGTCTGA
GTCTGACATTGTGAGAAGATACACGTATACAGATACACAGATTTTTTTTTAGTGATTTTCTTCTAGGAAAATTTTTGGTC
TTAGTTCTGCTTTGTGATGTACACTCCAACGCATGGCATGCTGTAACAAGTGAATCATACGTACATTGTAAATATGAAAC
AGTCTCTTCGTAGTTCGGCCTCCTGAAAATGCATTTGCAGGACGAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55991.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis