Browse Element(s) Details


Os.9019.1.S1_at

Description gb:AK121221.1
DB_XREF= gi:37990844
TID=Os.9019.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ubiquitin-conjugating enzyme (OSJNBb0060I05.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090H15, full insert sequence.
FL= gb:AK121221.1 gb:AK105227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3912011/11Ubiquitin-conjugating enzyme E2 I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39060OsAffx.30717.1.S1_at11/1110+20493681..20494537hypothetical protein
LOC_Os10g39070OsAffx.20169.1.S1_at11/1110+20495449..20497585retrotransposon protein, putative, LINE subclass
LOC_Os10g39080Os.56717.1.S1_at3/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39080OsAffx.30486.1.S1_at1/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39084OsAffx.7944.1.S1_x_at8/1110+20503845..20504176hypothetical protein
LOC_Os10g39090Os.55991.1.S1_s_at11/1110+20507751..20509331expressed protein
LOC_Os10g39090Os.55991.1.S1_at11/1110+20507751..20509331expressed protein
LOC_Os10g39100Os.46418.1.S1_at11/1110+20513152..20515234Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g39110OsAffx.18574.1.S1_x_at11/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39110OsAffx.22609.1.S1_x_at1/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39120Os.9019.1.S1_at11/1110+20518225..20521635Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os10g39130Os.37813.1.S1_at10/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39130Os.16010.1.S1_at1/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009650biological_processUV protection
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9019.1.S1_at--325--1111Chr10:20518961..20518985 (25 bp)
AGTGTGCCTCTCAATTCTTAATGAG
LOC_Os10g39120
Os.9019.1.S1_at--999--4711Chr10:20518854..20518878 (25 bp)
GCTGGAGACCTGCTATCACTGTAAA
LOC_Os10g39120
Os.9019.1.S1_at--694--8851Chr10:20518781..20518805 (25 bp)
TGATCCTGCACAGACTGACGGTTAT
LOC_Os10g39120
Os.9019.1.S1_at--364--7411Chr10:20518633..20518657 (25 bp)
GTGTTCGTGTTCAGGCCAAGCAGTA
LOC_Os10g39120
Os.9019.1.S1_at--518--2831Chr10:20518576..20518600 (25 bp)
AAGTTACTACCCGATTCATCATGCA
LOC_Os10g39120
Os.9019.1.S1_at--375--3611Chr10:20518449..20518473 (25 bp)
CATTGTGGACTTTTTGTGCTGTCAT
LOC_Os10g39120
Os.9019.1.S1_at--491--7311Chr10:20518434..20518458 (25 bp)
GTGCTGTCATTACCATTTGTGCTGT
LOC_Os10g39120
Os.9019.1.S1_at--900--2371Chr10:20518377..20518401 (25 bp)
AAACCGCTTGAGTGATGGATGCTAA
LOC_Os10g39120
Os.9019.1.S1_at--958--9171Chr10:20518296..20518320 (25 bp)
TGCCTTGTACTGTTTTGCAATTCAA
LOC_Os10g39120
Os.9019.1.S1_at--708--131Chr10:20518277..20518301 (25 bp)
ATTCAACTTGCTTGTGAGTCCTTTC
LOC_Os10g39120
Os.9019.1.S1_at--1127--1131Chr10:20518261..20518285 (25 bp)
AGTCCTTTCTTCGTGTTTCCATAAT
LOC_Os10g39120
Target Sequence 
AGTGTGCCTCTCAATTCTTAATGAGGATAGTGGCTGGAGACCTGCTATCACTGTAAAGCAGATCCTTGTTGGAATACAGG
ACTTGCTTGATCAGCCAAATCCTGCTGATCCTGCACAGACTGACGGTTATCACATTTTTATACAGGACAAACCAGAATAT
AAGAGGCGTGTTCGTGTTCAGGCCAAGCAGTACCCTGCTTTGCTTTGAGGACATTGGCCTAATAAAGTTACTACCCGATT
CATCATGCACATCCGCATAGTAGTTTGCAAAATCTCAGATTATTGCACCAGAAAATATCGGATTTTATGGGATATAACCT
AAAATGGAATGTTTGAAGAACTGTCCAATATCATTGTGGACTTTTTGTGCTGTCATTACCATTTGTGCTGTGTGAAGAAC
AGAAATAGCTTTGTCAACTGTTGAAACCGCTTGAGTGATGGATGCTAATTTGGATAACAAATGAACTAAATCCCNTGGTC
GTACCAACTCTCTNGAAGAGAAAATTGCCTTGTACTGTTTTGCAATTCAACTTGCTTGTGAGTCCTTTCTTCGTGTTTCC
ATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis