Browse Element(s) Details


Os.37813.1.S1_at

Description gb:AY551919.1
DB_XREF= gi:45385959
TID=Os.37813.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37813 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS-box protein RMADS214 mRNA, complete cds.
PROD=MADS-box protein RMADS214
FL= gb:AF141965.1 gb:AY551919.1 gb:AK070135.1 gb:AY345224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3913010/11Agamous-like MADS box protein AGL19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39090Os.55991.1.S1_s_at11/1110+20507751..20509331expressed protein
LOC_Os10g39090Os.55991.1.S1_at11/1110+20507751..20509331expressed protein
LOC_Os10g39100Os.46418.1.S1_at11/1110+20513152..20515234Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g39110OsAffx.18574.1.S1_x_at11/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39110OsAffx.22609.1.S1_x_at1/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39120Os.9019.1.S1_at11/1110+20518225..20521635Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os10g39130Os.37813.1.S1_at10/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39130Os.16010.1.S1_at1/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39140OsAffx.18575.1.S1_x_at11/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140Os.39583.1.A1_at10/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140OsAffx.23696.1.S1_x_at1/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39150Os.24307.1.S1_at11/1110+20563883..20565534expressed protein
LOC_Os10g39160OsAffx.20168.1.S1_at11/1110+20566022..20567148Peroxidase family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37813.1.S1_at--1045--2691NONE
AAGCTCTTGATGAGTCCAGACGGAA
NONE
Os.37813.1.S1_at--507--8031Chr10:20543094..20543118 (25 bp)
GGAGCGGACTTTGCTTAAAGACAAC
LOC_Os10g39130
Os.37813.1.S1_at--758--10331Chr10:20543124..20543460 (25 bp)
TTTACGCGGAAAGCATCGCAACCTT
LOC_Os10g39130
Os.37813.1.S1_at--263--3991Chr10:20543521..20543545 (25 bp)
CGGGACGTGCCTATGACGAGCAGCA
LOC_Os10g39130
Os.37813.1.S1_at--499--3491Chr10:20543565..20543589 (25 bp)
CATGGACGTGGAGACTGATCTGTAC
LOC_Os10g39130
Os.37813.1.S1_at--61--6411Chr10:20543581..20543605 (25 bp)
GATCTGTACATTGGATTGCCCGGCA
LOC_Os10g39130
Os.37813.1.S1_at--947--5651Chr10:20543631..20543655 (25 bp)
GACAGGTTGAAGAAGGCCAGCCACA
LOC_Os10g39130
Os.37813.1.S1_at--996--1471Chr10:20543685..20543709 (25 bp)
AGCAACGACGCCAGTGACATCCTGT
LOC_Os10g39130
Os.37813.1.S1_at--468--8951Chr10:20543699..20543723 (25 bp)
TGACATCCTGTTCATCTCACAAGAA
LOC_Os10g39130
Os.37813.1.S1_at--384--4991Chr10:20543739..20543763 (25 bp)
GCATGCGCACATGAAACCCAGGCAT
LOC_Os10g39130
Os.37813.1.S1_at--48--3491Chr10:20543757..20543781 (25 bp)
CAGGCATGCAGTTCTCGGTGGGTAA
LOC_Os10g39130
Target Sequence 
AAGCTCTTGATGAGTCCAGACGGAAAATATTGGGAGAAAATTTAGAAGGATNCTCTATTGAAGAACTGCGTGGTCTAGAA
ATGAAACTTGAGAAGAGCCTCCACAANATAAGACTAAAGAAGACCGAGCTTCTGGAGCNGCAGATAGCCAAGCTGAAAGA
GAAGGAGCGGACTTTGCTTAAAGACAACGAAAATTTACGCGGAAAGCATCGCAACCTTGAGGCTGCGGCGCTGGTGGCTN
AACCACATGACGACGACGACGGCGCCGGCGGCGTGGCCGCGGGACGTGCCTATGACGAGCAGCACAGCCGGCGCCGCNGA
CGCCATGGACGTGGAGACTGATCTGTACATTGGATTGCCCGGCACTGAGCGCTCCTCCAACCGGTCGGAGACAGGTTGAA
GAAGGCCAGCCACAGCAACAGCTGCTATATAGCATGCAGTAGCAGCAACGACGCCAGTGACATCCTGTTCATCTCACAAG
AATAACCAGAGCTNCTACGCATGCGCACATGAAACCCAGGCATGCAGTTCTCGGTGGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis