Browse Element(s) Details


Os.39583.1.A1_at

Description gb:CF311960
DB_XREF= gi:33683721
DB_XREF=ABF--07-H09.b1
CLONE=ABF--07-H09
TID=Os.39583.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39583 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3914010/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39130Os.37813.1.S1_at10/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39130Os.16010.1.S1_at1/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39140OsAffx.18575.1.S1_x_at11/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140Os.39583.1.A1_at10/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140OsAffx.23696.1.S1_x_at1/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39150Os.24307.1.S1_at11/1110+20563883..20565534expressed protein
LOC_Os10g39160OsAffx.20168.1.S1_at11/1110+20566022..20567148Peroxidase family protein
LOC_Os10g39170Os.5099.1.S1_at11/1110+20570460..20572645Peroxidase family protein, expressed
LOC_Os10g39190OsAffx.30718.1.S1_x_at11/1110+20586477..20587415B3 DNA binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39583.1.A1_at--941--8071Chr10:20557878..20557901 (24 bp)
GGAGCTTGGAGTTCCGAACACACTT
LOC_Os10g39140
Os.39583.1.A1_at--598--2191NONE
ACACACTTTACACCATTTCCTTTTG
NONE
Os.39583.1.A1_at--166--2891Chr10:20558007..20558031 (25 bp)
AAGGTTTGGCCGGTCTATTACACAG
LOC_Os10g39140
Os.39583.1.A1_at--460--371Chr10:20558039..20558063 (25 bp)
ATCAATCCTCAAGTCAGTCAGTCTA
LOC_Os10g39140
Os.39583.1.A1_at--1126--2831Chr10:20558049..20558073 (25 bp)
AAGTCAGTCAGTCTATTCACATATC
LOC_Os10g39140
Os.39583.1.A1_at--987--3131Chr10:20558126..20558150 (25 bp)
AATTCTACTTGGGAGGTCATGACAG
LOC_Os10g39140
Os.39583.1.A1_at--801--6911Chr10:20558154..20558178 (25 bp)
GTAGGAATGCAAGCGGGCAACCCAC
LOC_Os10g39140
Os.39583.1.A1_at--755--7591Chr10:20558168..20558192 (25 bp)
GGGCAACCCACTGCCTGTATAAAAA
LOC_Os10g39140
Os.39583.1.A1_at--586--1211Chr10:20558203..20558227 (25 bp)
AGTTTATTTACTACTTGCTACTATA
LOC_Os10g39140
Os.39583.1.A1_at--857--1411Chr10:20558269..20558293 (25 bp)
AGAAAATAAAACACCGCTTGCTCGG
LOC_Os10g39140
Os.39583.1.A1_at--1113--4191Chr10:20558295..20558319 (25 bp)
CCCCTTACATCCCTACAATATTGTT
LOC_Os10g39140
Target Sequence 
GGAGCTTGGAGTTCCGAACACACTTTACACCATTTCCTTTTGTAGTTGCACGTTAGCAAACATTTTCAAAAGGTAAATGG
TTTGCTATCATTTAAAACATGACGCATTAGAGAGGATGAAGCATAAATAAAGGTTTGGCCGGTCTATTACACAGACATAA
GATCAATCCTCAAGTCAGTCAGTCTATTCACATATCACAAGTTCACAAATAACAAGATATGCGACAAAGGATATCATCAA
TCTTGTCAAATTCTACTTGGGAGGTCATGACAGAATGTAGGAATGCAAGCGGGCAACCCACTGCCTGTATAAAAAACTGT
CTTATAGTTTATTTACTACTTGCTACTATAAAGTTTGAAAGAAAAAATCAACTACAATTGTAATAACCGGAAGAAAATAA
AACACCGCTTGCTCGGGCCCCTTACATCCCTACAATATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39583.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis