Browse Element(s) Details


OsAffx.18574.1.S1_x_at

Description tigr:9638.m03529
TID=OsAffx.18574.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative alpha-expansin protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3911011/11Alpha-expansin 7 precursor, putative
LOC_Os06g019201/11Alpha-expansin 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39060OsAffx.30717.1.S1_at11/1110+20493681..20494537hypothetical protein
LOC_Os10g39070OsAffx.20169.1.S1_at11/1110+20495449..20497585retrotransposon protein, putative, LINE subclass
LOC_Os10g39080Os.56717.1.S1_at3/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39080OsAffx.30486.1.S1_at1/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39084OsAffx.7944.1.S1_x_at8/1110+20503845..20504176hypothetical protein
LOC_Os10g39090Os.55991.1.S1_s_at11/1110+20507751..20509331expressed protein
LOC_Os10g39090Os.55991.1.S1_at11/1110+20507751..20509331expressed protein
LOC_Os10g39100Os.46418.1.S1_at11/1110+20513152..20515234Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g39110OsAffx.18574.1.S1_x_at11/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39110OsAffx.22609.1.S1_x_at1/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39120Os.9019.1.S1_at11/1110+20518225..20521635Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os10g39130Os.37813.1.S1_at10/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39130Os.16010.1.S1_at1/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18574.1.S1_x_at--101--10491Chr10:20517260..20517284 (25 bp)
TTCAAGGACGGCTACGGGTGCGGGA
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--659--9931Chr10:20517272..20517296 (25 bp)
TACGGGTGCGGGACGTGCTACCAGA
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--99--5771Chr10:20517283..20517307 (25 bp)
GACGTGCTACCAGATGCGGTGCGTG
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--273--4671Chr10:20517424..20517448 (25 bp)
GCGGGCGCACTTTGACCTCTCCAAG
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--1096--4371Chr10:20517444..20517468 (25 bp)
CCAAGCCGGCGTTCATGCGGATGGC
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--912--611Chr10:20517458..20517482 (25 bp)
ATGCGGATGGCCGACTGGCGCGCCG
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--342--7591Chr10:20517551..20517575 (25 bp)
GGGAACCCGTACTGGCTGCTGGCCT
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--573--1791Chr10:20517555..20517579 (25 bp)
ACCCGTACTGGCTGCTGGCCTACGT
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--627--4452Chr10:20517572..20517596 (25 bp)
GCCTACGTCATGAACGTCGCCGGCG
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--486--10851Chr10:20517643..20517667 (25 bp)
TTGGGTGCGGATGAGCCACAACTGG
LOC_Os10g39110
OsAffx.18574.1.S1_x_at--91--9411Chr10:20517674..20517698 (25 bp)
TCGTACCAGGCGTTCGCGCAGCTCG
LOC_Os10g39110
Target Sequence 
TTCAAGGACGGCTACGGGTGCGGGACGTGCTACCAGATGCGGTGCGTGGGGACGGCGTCCTGCTACAGGGGCTCGCCGGC
GATCACCGTGACGGCGACCAACCTGTGCCCGCCCAACTGGGCGGAGGACCCCGACCGCGGCGGCGGCGGCTGGTGCAACC
CGCCGCGGGCGCACTTTGACCTCTCCAAGCCGGCGTTCATGCGGATGGCCGACTGGCGCGCCGGCATCGTCCCCGTCATG
TACCGCCGCGTGCCGTGCGCCCGCGCCGGCGGCCTGCGGTTCGCGCTGCAGGGGAACCCGTACTGGCTGCTGGCCTACGT
CATGAACGTCGCCGGCGCCGGCGACGTCGGGGACATGTGGGTGAAGGCCGGCGGCGGCGGGGGTTGGGTGCGGATGAGCC
ACAACTGGGGCGCGTCGTACCAGGCGTTCGCGCAGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18574.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis