Browse Element(s) Details


Os.46540.1.S1_at

Description gb:AK066334.1
DB_XREF= gi:32976352
TID=Os.46540.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0042H09.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063K07, full insert sequence.
FL= gb:AK066334.1 gb:AK059709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4106011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41030Os.18330.1.S2_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S1_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S3_at10/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41040Os.14119.2.S1_x_at11/1110+21709793..21714041expressed protein
LOC_Os10g41040Os.14119.1.S1_x_at6/1110+21709793..21714041expressed protein
LOC_Os10g41050Os.46506.1.S1_at11/1110+21716848..21718761expressed protein
LOC_Os10g41060Os.46540.1.S1_at11/1110+21725326..21727262expressed protein
LOC_Os10g41070OsAffx.30743.2.S1_x_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41070OsAffx.30743.2.S1_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41079NANA10+21732717..21734674hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_x_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41100Os.10751.1.S1_at11/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41100Os.56275.1.S1_x_at9/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41110Os.27665.1.S1_at6/1110+21750525..21753511Autophagocytosis associated protein, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46540.1.S1_at--252--5191Chr10:21726366..21726390 (25 bp)
GCAATGCGAGTGTTCTTCCGTATGA
LOC_Os10g41060
Os.46540.1.S1_at--740--5311Chr10:21726391..21726415 (25 bp)
GAAGGGTCACTCATGGAGTCCTGAC
LOC_Os10g41060
Os.46540.1.S1_at--998--3491Chr10:21726402..21726426 (25 bp)
CATGGAGTCCTGACATCTGGTGCAA
LOC_Os10g41060
Os.46540.1.S1_at--1128--10831Chr10:21726878..21726902 (25 bp)
TTGGTGTGTACAACGAGCTTCCCAC
LOC_Os10g41060
Os.46540.1.S1_at--158--5911Chr10:21726892..21726916 (25 bp)
GAGCTTCCCACATGGGTTGAGGCAG
LOC_Os10g41060
Os.46540.1.S1_at--251--8911Chr10:21726953..21726977 (25 bp)
TGAGCACGGCACAAGGTCTGGTAGA
LOC_Os10g41060
Os.46540.1.S1_at--1121--5371Chr10:21727026..21727050 (25 bp)
GAAGAATCTGCTTCGGCAGGTCGCT
LOC_Os10g41060
Os.46540.1.S1_at--1046--2031Chr10:21727119..21727143 (25 bp)
ACTATTTTCATGTTGGCAGGTGGTA
LOC_Os10g41060
Os.46540.1.S1_at--304--10031Chr10:21727149..21727173 (25 bp)
TAGAAGGTGCCTTATTGATGCCAGG
LOC_Os10g41060
Os.46540.1.S1_at--870--6351Chr10:21727165..21727189 (25 bp)
GATGCCAGGCGTATATATTGTTGTA
LOC_Os10g41060
Os.46540.1.S1_at--739--7111Chr10:21727200..21727224 (25 bp)
GTCAGGTAGTTTTGTACTGTACACA
LOC_Os10g41060
Target Sequence 
GCAATGCGAGTGTTCTTCCGTATGAGAAGGGTCACTCATGGAGTCCTGACATCTGGTGCAAGGAGGGGGAGTTACTGAAA
CGCACAAGAAAAGGAGATTTACACAAGACACGAGTATCTATATACATCAACAAGAGGTCACAGGTCATATTGAAGTTGAA
GAGTAAACACATAGGAGGAGCACTATCAAAGAAGAACAAGAGTGTGGTTTTTGGTGTGTACAACGAGCTTCCCACATGGG
TTGAGGCAGGGAAACATTTCACAGAGGAGAGATGCTGCTTTGGCCTGAGCACGGCACAAGGTCTGGTAGAGTTTGAGTGT
GAGAACAGCACAAGTAAACAGAGGTGGGTCGATGATGTGAAGAATCTGCTTCGGCAGGTCGCTGCAGAAGAGCAAGTGGA
AAATAAGTTGGGATCAGTGAAGCTCAGTTGATGTAGTTCATACATGTGTACACTATTTTCATGTTGGCAGGTGGTATACC
ATAGAAGGTGCCTTATTGATGCCAGGCGTATATATTGTTGTACTCTTAAATTGTCAGGTAGTTTTGTACTGTACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis