Browse Element(s) Details


Os.46544.1.A1_at

Description gb:AK066066.1
DB_XREF= gi:32976084
TID=Os.46544.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0061I18.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055E03, full insert sequence.
FL= gb:AK066066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2506011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25020OsAffx.193.1.S1_x_at8/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020OsAffx.193.1.S1_at2/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020Os.5164.1.S1_at1/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25030Os.5164.1.S1_at11/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_x_at6/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_at1/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25040OsAffx.30524.1.S1_x_at11/1110+12560680..12563012Red chlorophyll catabolite reductase family protein, expressed
LOC_Os10g25060Os.46544.1.A1_at11/1110+12567955..12570741expressed protein
LOC_Os10g25060Os.46544.2.S1_x_at10/1110+12567955..12570741expressed protein
LOC_Os10g25070NANA10+12572212..12574345retrotransposon protein, putative, unclassified
LOC_Os10g25080NANA10+12576583..12582158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25090Os.46690.1.S1_x_at11/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os10g25090Os.3356.1.S1_at9/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46544.1.A1_at--562--5331Chr10:12568512..12568536 (25 bp)
GAAGTCGATTCAGAGCCATGCAAGA
LOC_Os10g25060
Os.46544.1.A1_at--536--6171Chr10:12568486..12568510 (25 bp)
GAGGAGGCGGCCTACAAATTCCACT
LOC_Os10g25060
Os.46544.1.A1_at--231--2251Chr10:12568471..12568495 (25 bp)
AAATTCCACTGCTACACCTCATGAC
LOC_Os10g25060
Os.46544.1.A1_at--720--991Chr10:12568433..12568457 (25 bp)
AGGATCAATCACCTTCATTTGTTGT
LOC_Os10g25060
Os.46544.1.A1_at--944--5571Chr10:12568165..12568189 (25 bp)
GAAATGTATCGTTCGTTCTTGTGGT
LOC_Os10g25060
Os.46544.1.A1_at--390--8331Chr10:12568129..12568153 (25 bp)
GGCTGCATTTGTTTCCTAGTTCATA
LOC_Os10g25060
Os.46544.1.A1_at--473--6571Chr10:12568096..12568120 (25 bp)
GATTCTCTGGTAGAACATCAGGCTC
LOC_Os10g25060
Os.46544.1.A1_at--920--9631Chr10:12568079..12568103 (25 bp)
TCAGGCTCAAAGACTGTCCACGATT
LOC_Os10g25060
Os.46544.1.A1_at--89--1971Chr10:12568042..12568066 (25 bp)
ACTGTGATGCCTTGTGTTGTATTTC
LOC_Os10g25060
Os.46544.1.A1_at--477--191Chr10:12568022..12568046 (25 bp)
ATTTCAGCGGCTGTTGTGATCTGCA
LOC_Os10g25060
Os.46544.1.A1_at--906--10531Chr10:12567991..12568015 (25 bp)
TTCAGTAGTATCCATGCTTTGTCAT
LOC_Os10g25060
Target Sequence 
GAAGTCGATTCAGAGCCATGCAAGAGGAGGAGGCGGCCTACAAATTCCACTGCTACACCTCATGACCAGACAACATAACA
GGATCAATCACCTTCATTTGTTGTTGTTCCATCCGGAAAATCACCCGCAGCGACAAAAAGCCAGCGAAGACCAGGAGTTT
CGTCGAGACTGAAAGGAAGATTGGAGAACATGGGTTGGGTTGGAATCTTGCTCAACTTGTTGTGGTGATGGGCACTTGTG
CTGCTGCTAGTCCTCAGTTGACTAACTGAAATGTATCGTTCGTTCTTGTGGTGTGTATGAGAGGGCTGCATTTGTTTCCT
AGTTCATATNTAAATCGATTCTCTGGTAGAACATCAGGCTCAAAGACTGTCCACGATTGAATTGAATTGAACTGTGATGC
CTTGTGTTGTATTTCAGCGGCTGTTGTGATCTGCAAGTGGATTCAGTAGTATCCATGCTTTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46544.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis