Browse Element(s) Details


Os.46544.2.S1_x_at

Description gb:NM_196275.1
DB_XREF= gi:37533909
TID=Os.46544.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0061I18.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0061I18.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2506010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25020OsAffx.193.1.S1_x_at8/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020OsAffx.193.1.S1_at2/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020Os.5164.1.S1_at1/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25030Os.5164.1.S1_at11/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_x_at6/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_at1/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25040OsAffx.30524.1.S1_x_at11/1110+12560680..12563012Red chlorophyll catabolite reductase family protein, expressed
LOC_Os10g25060Os.46544.1.A1_at11/1110+12567955..12570741expressed protein
LOC_Os10g25060Os.46544.2.S1_x_at10/1110+12567955..12570741expressed protein
LOC_Os10g25070NANA10+12572212..12574345retrotransposon protein, putative, unclassified
LOC_Os10g25080NANA10+12576583..12582158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25090Os.46690.1.S1_x_at11/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os10g25090Os.3356.1.S1_at9/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46544.2.S1_x_at--462--831Chr10:12569578..12569602 (25 bp)
ATGGAGGCATCCTTCATGGAACAAC
LOC_Os10g25060
Os.46544.2.S1_x_at--1121--271Chr10:12569550..12569574 (25 bp)
ATAGGCATGACCACCATGGGCTTGA
LOC_Os10g25060
Os.46544.2.S1_x_at--849--7471Chr10:12569472..12569496 (25 bp)
GTGTGTGCGACAACCTAAGGTCTGA
LOC_Os10g25060
Os.46544.2.S1_x_at--715--6191Chr10:12569447..12569471 (25 bp)
GAGGAATGATGCTCACGCTCATGAT
LOC_Os10g25060
Os.46544.2.S1_x_at--1007--8871Chr10:12569426..12569450 (25 bp)
TGATGGAGGCATGAGCTGCTTCCCT
LOC_Os10g25060
Os.46544.2.S1_x_at--111--4771Chr10:12569412..12569436 (25 bp)
GCTGCTTCCCTGAGAATCCATGGAT
LOC_Os10g25060
Os.46544.2.S1_x_at--588--9771Chr10:12569388..12569412 (25 bp)
TAAGGCGTTTCAGACCACGCGATGC
LOC_Os10g25060
Os.46544.2.S1_x_at--126--7311Chr10:12569253..12569277 (25 bp)
GTGCTGGAGGAATTCTTGCTGATAA
LOC_Os10g25060
Os.46544.2.S1_x_at--271--2431NONE
AAAAGCACAGGTTGTTCCATCCGGA
NONE
Os.46544.2.S1_x_at--242--5851Chr10:12568284..12568308 (25 bp)
GACCAGGAGTTTCGTCGAGACTGAA
LOC_Os10g25060
Os.46544.2.S1_x_at--721--3491Chr10:12568244..12568268 (25 bp)
CATGGGTTGGGTTGGAATCTTGCTC
LOC_Os10g25060
Target Sequence 
ATGGAGGCATCCTTCATGGAACAACTCTATAGGCATGACCACCATGGGCTTGACAGGAATAGGAGTCATGCGGGTGGCGC
AATTGGGTTCAGGGTGCACCGGGAGGGTGTGTGCGACAACCTAAGGTCTGAGAGGAATGATGCTCACGCTCATGATGGAG
GCATGAGCTGCTTCCCTGAGAATCCATGGATAAGGCGTTTCAGACCACGCGATGCCGGTGTGAACCGCAAGAATGATGCG
GTGGGGTTTTCTGTGGATGACGATGAGTCGGGTACTGACATGGTCCGACAGAGGGTTCGGGTGCATGGAAGAGAAGCGAA
GAGTTGTGCTGGAGGAATTCTTGCTGATAAAAGCACAGGTTGTTCCATCCGGAAAATCACCCGCAGCGACAAAAAGCCAG
CGAAGACCAGGAGTTTCGTCGAGACTGAAAGGAAGATTGGAGAACATGGGTTGGGTTGGAATCTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46544.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis