Browse Element(s) Details


Os.46556.2.A1_at

Description gb:NM_194685.1
DB_XREF= gi:37530729
TID=Os.46556.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46556 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative bacterial blight resistance protein Xa1-like protein (OSJNBa0056A20.14), mRNA.
PROD=putative bacterial blight resistance proteinXa1-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0367011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03660Os.23283.1.S1_at10/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.8362.2.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03670Os.46556.2.A1_at11/1110+1626713..1630918NB-ARC domain containing protein, expressed
LOC_Os10g03680OsAffx.18112.1.S1_at10/1110+1631136..1634213hypothetical protein
LOC_Os10g03690Os.8362.2.S1_x_at10/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03690Os.8362.1.S1_at9/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03700OsAffx.19421.1.S1_at2/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700Os.46058.2.S1_x_at1/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46556.2.A1_at--1059--1011Chr10:1630318..1630342 (25 bp)
AGGTATCTTCTCCAGGGATCACCTG
LOC_Os10g03670
Os.46556.2.A1_at--871--6231Chr10:1630393..1630417 (25 bp)
GTTGCAACTTGGAGGGTGCGTCCTC
LOC_Os10g03670
Os.46556.2.A1_at--1091--7251Chr10:1630412..1630436 (25 bp)
GTCCTCTCTTGTGCAGCAATGCAGG
LOC_Os10g03670
Os.46556.2.A1_at--1100--6111Chr10:1630480..1630504 (25 bp)
GAGGGCTTACGGTTACGACATTTAT
LOC_Os10g03670
Os.46556.2.A1_at--285--3351Chr10:1630539..1630563 (25 bp)
CACGAACAGTGGTGGCTGGCTCTAA
LOC_Os10g03670
Os.46556.2.A1_at--570--8531Chr10:1630578..1630602 (25 bp)
TGGACATTGGCAGCATCTCAGGCGT
LOC_Os10g03670
Os.46556.2.A1_at--899--1971Chr10:1630639..1630663 (25 bp)
ACTGCACAGATTAACCTTCCGGAAT
LOC_Os10g03670
Os.46556.2.A1_at--943--811Chr10:1630670..1630694 (25 bp)
ATGGTGCAGCACTTCACGGAGGAGC
LOC_Os10g03670
Os.46556.2.A1_at--584--951Chr10:1630695..1630719 (25 bp)
AGGAAACTGCGCTCAAGCTGCTCAC
LOC_Os10g03670
Os.46556.2.A1_at--561--1371Chr10:1630729..1630753 (25 bp)
AGAGCTCATCTTTTATGGGTGCAAC
LOC_Os10g03670
Os.46556.2.A1_at--337--2791Chr10:1630799..1630823 (25 bp)
AAGAGGCTCGAGGTGTCCTACCGGC
LOC_Os10g03670
Target Sequence 
AGGTATCTTCTCCAGGGATCACCTGACCATGAATGTGAAGGATGAAGTGCTCAAGAAGCTCATGTCCCTCCATTGGTTGC
AACTTGGAGGGTGCGTCCTCTCTTGTGCAGCAATGCAGGCTGTTCATGACGACCTTCCCCTGATGAACAACCTCAAGGCG
TTGAGGGCTTACGGTTACGACATTTATGACCTGGAAGAAGATCGGCTGATGACAAGGATGGCACGAACAGTGGTGGCTGG
CTCTAAGGAGCTGGAGGAGTTGGACATTGGCAGCATCTCAGGCGTTCTTGCTGCTCCAATCTGCCAACGCCTCTCAGCCT
CACTGCACAGATTAACCTTCCGGAATGACACAATGGTGCAGCACTTCACGGAGGAGCAGGAAACTGCGCTCAAGCTGCTC
ACCTCACTCCAAGAGCTCATCTTTTATGGGTGCAACAGGTTGCAGTCTCTCCCCTCATCATTGCGTTCTCTTCGTTCCCT
CAAGAGGCTCGAGGTGTCCTACCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46556.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis