Browse Element(s) Details


Os.23283.1.S1_at

Description gb:CA759133
DB_XREF= gi:25803165
DB_XREF=BR060001000B10.ab1
CLONE=BR060001000B10.ab1
TID=Os.23283.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0056A20.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0366010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03650OsAffx.20775.1.S1_at10/1110+1579198..1582757expressed protein
LOC_Os10g03650Os.49478.1.S1_at1/1110+1579198..1582757expressed protein
LOC_Os10g03660Os.23283.1.S1_at10/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.8362.2.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03670Os.46556.2.A1_at11/1110+1626713..1630918NB-ARC domain containing protein, expressed
LOC_Os10g03680OsAffx.18112.1.S1_at10/1110+1631136..1634213hypothetical protein
LOC_Os10g03690Os.8362.2.S1_x_at10/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03690Os.8362.1.S1_at9/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03700OsAffx.19421.1.S1_at2/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700Os.46058.2.S1_x_at1/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23283.1.S1_at--111--10791Chr10:1606985..1607009 (25 bp)
TTGTAAGCCTGACTCTGGGTTCGTG
LOC_Os10g03660
Os.23283.1.S1_at--367--9431Chr10:1606965..1606989 (25 bp)
TCGTGGTGTCTGGAGTCAAACTTCT
LOC_Os10g03660
Os.23283.1.S1_at--1108--1211Chr10:1606773..1606796 (24 bp)
AGTTCATACTCGAAGAATCGTTGGC
LOC_Os10g03660
Os.23283.1.S1_at--1120--411Chr10:1606734..1606758 (25 bp)
ATCATTTACTTGTGAACGCCTTAAG
LOC_Os10g03660
Os.23283.1.S1_at--825--2591Chr10:1606720..1606744 (25 bp)
AACGCCTTAAGGTTGTTGAAGTCAT
LOC_Os10g03660
Os.23283.1.S1_at--338--7991Chr10:1606686..1606710 (25 bp)
GGATGATCCTCTGGTGAACTGCGTG
LOC_Os10g03660
Os.23283.1.S1_at--651--4991Chr10:1606639..1606663 (25 bp)
GCATGACCTCTCTTCAGATTAGAAT
LOC_Os10g03660
Os.23283.1.S1_at--689--151Chr10:1606622..1606646 (25 bp)
ATTAGAATCAACCACCTGGACGGCT
LOC_Os10g03660
Os.23283.1.S1_at--7--2151Chr10:1606573..1606597 (25 bp)
ACAGAGATGAGTACAGGCGTCGACA
LOC_Os10g03660
Os.23283.1.S1_at--104--911Chr10:1606559..1606583 (25 bp)
AGGCGTCGACAGTACATGGGTTAAT
LOC_Os10g03660
Os.23283.1.S1_at--199--3391NONE
CAGCGAATTTAGAGGGCACATAGAT
NONE
Target Sequence 
TTGTAAGCCTGACTCTGGGTTCGTGGTGTCTGGAGTCAAACTTCTATGGACTGANTGTCTTCCTTCAGAACTCANNGAAA
CTGGAGAAGCTGACATTGAAACTCAATAAAGTTCATACTCGAAGAATCGTTGGCNAGCTTAAAGAAAAATCATTTACTTG
TGAACGCCTTAAGGTTGTTGAAGTCATATGCATTGGGGATGATCCTCTGGTGAACTGCGTGGAAGAATTCTTTTTCAACA
GNGGCATGACCTCTCTTCAGATTAGAATCAACCACCTGGACGGCTNCGAGCTTTATGAACCTAGGTTATACAGAGATGAG
TACAGGCGTCGACAGTACATGGGTTAATTTGCGNTGNCATCATTCAGTCTCTNCATTTGTAGGATGAACCTACATACATT
TCATNCAGCGAATTTAGAGGGCACATAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis