Browse Element(s) Details


OsAffx.20775.1.S1_at

Description tigr:9638.m00272
TID=OsAffx.20775.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Xyloglucan fucosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0365010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03630NANA10+1558042..1558810hypothetical protein
LOC_Os10g03640OsAffx.30260.1.S1_at10/1110+1572006..1574645hypothetical protein
LOC_Os10g03650OsAffx.20775.1.S1_at10/1110+1579198..1582757expressed protein
LOC_Os10g03650Os.49478.1.S1_at1/1110+1579198..1582757expressed protein
LOC_Os10g03660Os.23283.1.S1_at10/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.8362.2.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20775.1.S1_at--538--7191NONE
GTCGGCGTCCAGACTGCGGAAGCCA
NONE
OsAffx.20775.1.S1_at--92--5431Chr10:1581042..1581066 (25 bp)
GAAGCCAGGCACTGTTCTGCTCAAG
LOC_Os10g03650
OsAffx.20775.1.S1_at--135--4511Chr10:1581077..1581101 (25 bp)
GCCGAGGACGACACGCTCACATGTG
LOC_Os10g03650
OsAffx.20775.1.S1_at--793--4831Chr10:1581091..1581115 (25 bp)
GCTCACATGTGCCAAGCCTTGGAGA
LOC_Os10g03650
OsAffx.20775.1.S1_at--478--10211Chr10:1582491..1582514 (24 bp)
TATTCTTCAAATTCTCATGAGCTGG
LOC_Os10g03650
OsAffx.20775.1.S1_at--760--5891Chr10:1582508..1582532 (25 bp)
GAGCTGGCTATCAATCAACTATTTC
LOC_Os10g03650
OsAffx.20775.1.S1_at--376--5251Chr10:1582536..1582560 (25 bp)
GAATCTTATGTTTCCCTAAATAGGG
LOC_Os10g03650
OsAffx.20775.1.S1_at--778--3051Chr10:1582554..1582578 (25 bp)
AATAGGGCCAAAGCCGCCTTGAAAG
LOC_Os10g03650
OsAffx.20775.1.S1_at--482--5551Chr10:1582574..1582598 (25 bp)
GAAAGGATCCTACAACCCGAGAGGT
LOC_Os10g03650
OsAffx.20775.1.S1_at--847--6511Chr10:1582610..1582634 (25 bp)
GATTTGGCGGTCCATAGAATCCAGC
LOC_Os10g03650
OsAffx.20775.1.S1_at--676--10011Chr10:1582624..1582648 (25 bp)
TAGAATCCAGCCTAAACCAGGTCGC
LOC_Os10g03650
Target Sequence 
GTCGGCGTCCAGACTGCGGAAGCCAGGCACTGTTCTGCTCAAGTGCCGCTGCCGCCGAGGACGACACGCTCACATGTGCC
AAGCCTTGGAGAGATATTCTTCAAATTCTCATGAGCTGGCTATCAATCAACTATTTCTTAGAATCTTATGTTTCCCTAAA
TAGGGCCAAAGCCGCCTTGAAAGGATCCTACAACCCGAGAGGTCAGGAAGGTTGGATTTGGCGGTCCATAGAATCCAGCC
TAAACCAGGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis