Browse Element(s) Details


Os.46567.1.S1_at

Description gb:AK063451.1
DB_XREF= gi:32973469
TID=Os.46567.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0042K08.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G01, full insert sequence.
FL= gb:AK063451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0743011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07400Os.11024.1.S1_at11/1110+3892249..3896819NB-ARC domain containing protein, expressed
LOC_Os10g07410OsAffx.380.1.S1_at11/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.8801.1.S1_at3/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.1283.1.S1_at2/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07420OsAffx.25595.2.S1_x_at3/1110+3910457..3910903hypothetical protein
LOC_Os10g07420OsAffx.25595.2.S1_at2/1110+3910457..3910903hypothetical protein
LOC_Os10g07430Os.46567.1.S1_at11/1110+3917158..3919926expressed protein
LOC_Os10g07440NANA10+3925348..3926042expressed protein
LOC_Os10g07450Os.16105.1.S1_at11/1110+3933608..3934170expressed protein
LOC_Os10g07460OsAffx.8479.1.S1_at11/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g07460Os.50619.1.S1_at1/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46567.1.S1_at--66--9712Chr10:3918141..3918165 (25 bp)
TCAAATCGAAGAGTTGCCTGGCCCC
LOC_Os10g07430
Os.46567.1.S1_at--873--4531Chr10:3918161..3918185 (25 bp)
GCCCCTCAATGCATGCTTGCACTTG
LOC_Os10g07430
Os.46567.1.S1_at--773--1332Chr10:3919605..3919629 (25 bp)
AGAGACAGAATGCTGTTCGTTGGTC
LOC_Os10g07430
Os.46567.1.S1_at--1067--6211Chr10:3919746..3919770 (25 bp)
GATGGCCAAATCGAAGAGTTGCCTG
LOC_Os10g07430
Os.46567.1.S1_at--465--3791Chr10:3919775..3919799 (25 bp)
CTCGATGCATGCTTGCACTTGGTTT
LOC_Os10g07430
Os.46567.1.S1_at--202--6872Chr10:3919796..3919820 (25 bp)
GTTTGTGCCAAGTTTGTCATAGCCG
LOC_Os10g07430
Os.46567.1.S1_at--397--4391Chr10:3919802..3919826 (25 bp)
GCCAAGTTTGTCATAGCCGGGCTAT
LOC_Os10g07430
Os.46567.1.S1_at--838--10111Chr10:3919824..3919848 (25 bp)
TATGATAGCCCTCGTTCGTATAGAC
LOC_Os10g07430
Os.46567.1.S1_at--333--1251Chr10:3919865..3919889 (25 bp)
AGATAGTTTGGGTCAGGCGTTCCTC
LOC_Os10g07430
Os.46567.1.S1_at--925--8291Chr10:3919880..3919904 (25 bp)
GGCGTTCCTCTTTTCGGTTTGAATG
LOC_Os10g07430
Os.46567.1.S1_at--419--10311Chr10:3919891..3919915 (25 bp)
TTTCGGTTTGAATGCATTGCTCCAA
LOC_Os10g07430
Target Sequence 
TCAAATCGAAGAGTTGCCTGGCCCCTCAATGCATGCTTGCACTTGGNNNNNGNNNAGTNNNTCATAGCNNNNNNATTNNT
GGANNTATNAGNTAGTGCNTATNNNNGTNNNCCGGCNANNGATNNCNNGNGNGNNATNNCGGTNNNTTCAGNNNNNGAGC
ATTAGAGACAGAATGCTGTTCGTTGGTCTCTACCAGGGATTCTCGCTCCGCGCCGCGGATTTCGCGGGGCTTGAGGGGAA
TTGTGTTTACTTCTTCAAGATGGACAGAGCCAGCAGGTCTTTCATCTACCGGTTCAGGATGGAGGATGGCCAAATCGAAG
AGTTGCCTGGCCCCTCGATGCATGCTTGCACTTGGTTTGTGCCAAGTTTGTCATAGCCGGGCTATGATAGCCCTCGTTCG
TATAGACTTATAAGGTAATCTTCAGATAGTTTGGGTCAGGCGTTCCTCTTTTCGGTTTGAATGCATTGCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis