Browse Element(s) Details


Os.46578.1.S1_x_at

Description gb:AK063043.1
DB_XREF= gi:32973061
TID=Os.46578.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0076M18.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D08, full insert sequence.
FL= gb:AK063043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3606011/11expressed protein
LOC_Os10g311508/11hypothetical protein
LOC_Os06g394102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36020Os.47915.1.S1_at11/118+22569216..22574706major intrinsic protein, putative, expressed
LOC_Os08g36030Os.55819.1.S1_at10/118+22578497..22579770Plant viral-response family protein, expressed
LOC_Os08g36040OsAffx.2532.2.S1_at11/118+22582566..22583492Plant viral-response family protein, expressed
LOC_Os08g36050OsAffx.29547.1.S1_at11/118+22585660..22586944hypothetical protein
LOC_Os08g36060Os.46578.1.S1_x_at11/118+22588314..22588915expressed protein
LOC_Os08g36060Os.46578.1.S1_at11/118+22588314..22588915expressed protein
LOC_Os08g36070Os.47463.1.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36070Os.14491.2.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36080NANA8+22601950..22605279transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36090NANA8+22612739..22613539hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46578.1.S1_x_at--1015--7552Chr08:22588527..22588551 (25 bp)
GGGCCAGCGCGACAGCGACAACCAT
LOC_Os08g36060
Os.46578.1.S1_x_at--861--4592Chr08:22588541..22588565 (25 bp)
GCGACAACCATTGGCCGGTGCGCAG
LOC_Os08g36060
Os.46578.1.S1_x_at--599--3372Chr08:22588579..22588603 (25 bp)
CAGCGCGAAGAAGAGGCGCGACCTT
LOC_Os08g36060
Os.46578.1.S1_x_at--483--292Chr08:22588750..22588774 (25 bp)
ATAGATGCAGCAGGGCAAACGGTGC
LOC_Os08g36060
Os.46578.1.S1_x_at--762--8473Chr08:22588796..22588820 (25 bp)
TGGCTGGCGCTACTGGACTTTGTAA
LOC_Os08g36060
Os.46578.1.S1_x_at--567--8392Chr08:22588801..22588825 (25 bp)
GGCGCTACTGGACTTTGTAATGTTT
LOC_Os08g36060
Os.46578.1.S1_x_at--891--5692Chr08:22588811..22588835 (25 bp)
GACTTTGTAATGTTTGCTATAGCTG
LOC_Os08g36060
Os.46578.1.S1_x_at--902--9073Chr08:22588825..22588849 (25 bp)
TGCTATAGCTGAAATTGTGTTGAAA
LOC_Os08g36060
Os.46578.1.S1_x_at--3--6672Chr08:22588843..22588867 (25 bp)
GTTGAAATTCAGTGATATCTCCATG
LOC_Os08g36060
Os.46578.1.S1_x_at--460--6512Chr08:22588856..22588880 (25 bp)
GATATCTCCATGAAAGTATGTTGAA
LOC_Os08g36060
Os.46578.1.S1_x_at--511--673Chr09:10623576..10623653 (25 bp)
ATGAAATCTTGTCTAATTATTGCTG
NONE
Target Sequence 
GGGCCAGCGCGACAGCGACAACCATTGGCCGGTGCGCAGGGAGGTGCNGCGGCAGCGCGAAGAAGAGGCGCGACCTTGGT
CAGGAGGCCCGTNGGCAACTGCGGGCCTGCACGGTCCGGCGCGACGGGGAGCTCAGGACTGGGTGAGTACGGCTGGGGAA
GGGAAGGCGTGAAGGGGAAGGTTGGCGCAGGGGCTGTTAGGGGCCNGCGGTGCTGGAGGAGGCATAGATGCAGCAGGGCA
AACGGTGCTNGAGGAGATGCAAGGGCGGTTGGCTGGCGCTACTGGACTTTGTAATGTTTGCTATAGCTGAAATTGTGTTG
AAATTCAGTGATATCTCCATGAAAGTATGTTGAAATTTTGTGAAATGAAATCTTGTCTAATTATTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46578.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis