Browse Element(s) Details


OsAffx.29547.1.S1_at

Description tigr:9636.m03627
TID=OsAffx.29547.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3605011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36010Os.51858.1.S1_at11/118+22559509..22561488F-box domain containing protein, expressed
LOC_Os08g36020Os.47915.1.S1_at11/118+22569216..22574706major intrinsic protein, putative, expressed
LOC_Os08g36030Os.55819.1.S1_at10/118+22578497..22579770Plant viral-response family protein, expressed
LOC_Os08g36040OsAffx.2532.2.S1_at11/118+22582566..22583492Plant viral-response family protein, expressed
LOC_Os08g36050OsAffx.29547.1.S1_at11/118+22585660..22586944hypothetical protein
LOC_Os08g36060Os.46578.1.S1_x_at11/118+22588314..22588915expressed protein
LOC_Os08g36060Os.46578.1.S1_at11/118+22588314..22588915expressed protein
LOC_Os08g36070Os.47463.1.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36070Os.14491.2.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36080NANA8+22601950..22605279transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29547.1.S1_at--453--1991Chr08:22586838..22586862 (25 bp)
ACTCGGCAGCATGGGCTTTGTTCGA
LOC_Os08g36050
OsAffx.29547.1.S1_at--87--10791Chr08:22586821..22586845 (25 bp)
TTGTTCGAAAGATCCATCGGCCAGT
LOC_Os08g36050
OsAffx.29547.1.S1_at--208--8171Chr08:22586796..22586820 (25 bp)
GGAACAATGACTACGCCATGACCAC
LOC_Os08g36050
OsAffx.29547.1.S1_at--269--691Chr08:22586779..22586803 (25 bp)
ATGACCACCGTCTTCACGAGGACAA
LOC_Os08g36050
OsAffx.29547.1.S1_at--659--5611Chr08:22586759..22586783 (25 bp)
GACAAGCAACGACCGAGACATCCTT
LOC_Os08g36050
OsAffx.29547.1.S1_at--917--8951Chr08:22586681..22586702 (22 bp)
TGACACCGGAGCCTATAGCATGCAT
LOC_Os08g36050
OsAffx.29547.1.S1_at--388--8531Chr08:22585946..22585970 (25 bp)
TGGACACTCTGAAGCTGCCGTTGTT
LOC_Os08g36050
OsAffx.29547.1.S1_at--723--6171Chr08:22585890..22585914 (25 bp)
GAGGAGGAGTTCTGGTCTCTCCCAA
LOC_Os08g36050
OsAffx.29547.1.S1_at--1104--6711Chr08:22585797..22585821 (25 bp)
GTTCTCCACTTCATACTGGACAGAC
LOC_Os08g36050
OsAffx.29547.1.S1_at--470--3191Chr08:22585726..22585750 (25 bp)
CAAGTCCTCCTTGGGTAGTAGCAAC
LOC_Os08g36050
OsAffx.29547.1.S1_at--644--7371Chr08:22585694..22585718 (25 bp)
GTGACTATCTCATGATCTCCACTGA
LOC_Os08g36050
Target Sequence 
ACTCGGCAGCATGGGCTTTGTTCGAAAGATCCATCGGCCAGTGGAACAATGACTACGCCATGACCACCGTCTTCACGAGG
ACAAGCAACGACCGAGACATCCTTGTCTCCCTCCGGCTCGCCGCACCGCCAGCTTCCTCCTGCGTCCAGTTCTACACCGA
TGACACCGGAGCCTATAGCATGCATCACGACGTGGACACTCTGAAGCTGCCGTTGTTCGAGTGGGAGGTGGATGGCACGC
TCCAGCTCGAGGAGGAGTTCTGGTCTCTCCCAAGCTACCAGGGATCACCTCTGCCACGGATTACGCCGACGTTCCCGGTC
TTCAGCATGCACGAGGCCGACGTTCTCCACTTCATACTGGACAGACCTGGATATGATGACAAGTGTTGGGTGATTACTGT
CGACATTAAGAACAAGTCCTCCTTGGGTAGTAGCAACGAATTTCGTGACTATCTCATGATCTCCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis