Browse Element(s) Details


Os.55819.1.S1_at

Description gb:AK108845.1
DB_XREF= gi:32994054
TID=Os.55819.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A01, full insert sequence.
FL= gb:AK108845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3603010/11Plant viral-response family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36000OsAffx.29545.1.S1_at11/118+22555060..22556693F-box domain containing protein
LOC_Os08g36010Os.51858.1.S1_at11/118+22559509..22561488F-box domain containing protein, expressed
LOC_Os08g36020Os.47915.1.S1_at11/118+22569216..22574706major intrinsic protein, putative, expressed
LOC_Os08g36030Os.55819.1.S1_at10/118+22578497..22579770Plant viral-response family protein, expressed
LOC_Os08g36040OsAffx.2532.2.S1_at11/118+22582566..22583492Plant viral-response family protein, expressed
LOC_Os08g36050OsAffx.29547.1.S1_at11/118+22585660..22586944hypothetical protein
LOC_Os08g36060Os.46578.1.S1_x_at11/118+22588314..22588915expressed protein
LOC_Os08g36060Os.46578.1.S1_at11/118+22588314..22588915expressed protein
LOC_Os08g36070Os.47463.1.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36070Os.14491.2.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36080NANA8+22601950..22605279transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55819.1.S1_at--1073--891Chr08:22578998..22579022 (25 bp)
AGGCGCTCGTCAACCTGGAGTTCAG
LOC_Os08g36030
Os.55819.1.S1_at--340--971Chr08:22578905..22578929 (25 bp)
AGGAGCCGCGTTACATGCCGCTGGT
LOC_Os08g36030
Os.55819.1.S1_at--1009--1051Chr08:22578808..22578832 (25 bp)
AGGTGGCGCCGGTCACGTCTTACGT
LOC_Os08g36030
Os.55819.1.S1_at--466--10471Chr08:22578789..22578813 (25 bp)
TTACGTGAGCCTTTGGAGATCGCGC
LOC_Os08g36030
Os.55819.1.S1_at--413--1291Chr08:22578773..22578797 (25 bp)
AGATCGCGCGGCCATAAGCGATATA
LOC_Os08g36030
Os.55819.1.S1_at--35--4631Chr08:22578756..22578780 (25 bp)
GCGATATAATCATCTTCCTTACTCC
LOC_Os08g36030
Os.55819.1.S1_at--260--8291Chr08:22578610..22578634 (25 bp)
GGCTTGGTTGGGTCCAGTGCAAACA
LOC_Os08g36030
Os.55819.1.S1_at--133--6611Chr08:22578561..22578585 (25 bp)
GATTGGTAGTTGCAGTCTTTGTGAC
LOC_Os08g36030
Os.55819.1.S1_at--983--1151Chr08:22578548..22578572 (25 bp)
AGTCTTTGTGACTTGCAACTTGAGG
LOC_Os08g36030
Os.55819.1.S1_at--1146--8991Chr08:22578535..22578559 (25 bp)
TGCAACTTGAGGGTACTGTGGATTT
LOC_Os08g36030
Os.55819.1.S1_at--862--8591Chr08:22578497..22578521 (25 bp)
TGGTCACCTTATTTGACTACTTGTG
NONE
Target Sequence 
AGGCGCTCGTCAACCTGGAGTTCAGCTGGTACCTGTCCGGCACCGTCGTGCTCGTCGTCGCGCTCTACCTCCGGCTGTGC
AGGCTGTACCCGGAGGAGCCGCGTTACATGCCGCTGGTCAGGGGAGATTGCCGCGACGACGATGAGGACGGCGGCGGCGA
CGGCGACGACAACGACGTGGAGGCTGGGAAAGGTGGCGCCGGTCACGTCTTACGTGAGCCTTTGGAGATCGCGCGGCCAT
AAGCGATATAATCATCTTCCTTACTCCCTCCACCCTATAATATAAATATTTTTAGCTATAAATCTGGACAATTGTGTATC
CAAATTCATAGCTAAAAGTTGCTATATTTTGGGACGGATGTAGTATCTAAAAAGGAAAAAAAAGTGTTGGCTTGGTTGGG
TCCAGTGCAAACAAACTATAGTCTGTGATGTAAATGAGATTGGTAGTTGCAGTCTTTGTGACTTGCAACTTGAGGGTACT
GTGGATTTGTGGTTTATTAATTGGTCACCTTATTTGACTACTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis