Browse Element(s) Details


OsAffx.29545.1.S1_at

Description tigr:9636.m03622
TID=OsAffx.29545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3600011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35939OsAffx.17354.1.S1_at11/118+22527729..22537140expressed protein
LOC_Os08g35939OsAffx.17354.1.S1_x_at11/118+22527729..22537140expressed protein
LOC_Os08g35939Os.52674.1.S1_at10/118+22527729..22537140expressed protein
LOC_Os08g35948Os.52936.1.S1_at11/118+22537718..22542745expressed protein
LOC_Os08g35960Os.24503.1.S1_x_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35960Os.24503.2.S1_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35970OsAffx.8061.1.S1_at9/118+22547210..22550393transposon protein, putative, Mutator sub-class
LOC_Os08g35980Os.48030.1.A1_at10/118+22550767..22551650hypothetical protein
LOC_Os08g35990OsAffx.29544.1.S1_x_at10/118+22552391..22553375hypothetical protein
LOC_Os08g36000OsAffx.29545.1.S1_at11/118+22555060..22556693F-box domain containing protein
LOC_Os08g36010Os.51858.1.S1_at11/118+22559509..22561488F-box domain containing protein, expressed
LOC_Os08g36020Os.47915.1.S1_at11/118+22569216..22574706major intrinsic protein, putative, expressed
LOC_Os08g36030Os.55819.1.S1_at10/118+22578497..22579770Plant viral-response family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29545.1.S1_at--808--10591Chr08:22556101..22556125 (25 bp)
TTCTCCTCGAATTGTCTCTCGACAA
LOC_Os08g36000
OsAffx.29545.1.S1_at--136--8731Chr08:22556089..22556113 (25 bp)
TGTCTCTCGACAACGTGCACAGCTT
LOC_Os08g36000
OsAffx.29545.1.S1_at--762--2151Chr08:22556071..22556095 (25 bp)
ACAGCTTCCACCACTCGGAGGTGTG
LOC_Os08g36000
OsAffx.29545.1.S1_at--61--551Chr08:22556027..22556051 (25 bp)
ATCCGGTCCCTTAGGATTTGGGCAG
LOC_Os08g36000
OsAffx.29545.1.S1_at--1016--3431Chr08:22556005..22556029 (25 bp)
CAGTTGATCAGGATTTTGGCTGCAG
LOC_Os08g36000
OsAffx.29545.1.S1_at--598--9311Chr08:22555969..22555993 (25 bp)
TCCCGCGTCTGGAGGATGCTGTCAT
LOC_Os08g36000
OsAffx.29545.1.S1_at--1007--6331Chr08:22555955..22555979 (25 bp)
GATGCTGTCATCTTCTTGGATTCAG
LOC_Os08g36000
OsAffx.29545.1.S1_at--528--5331Chr08:22555931..22555955 (25 bp)
GAAGTCACCACTCAAGTCTTGTGCA
LOC_Os08g36000
OsAffx.29545.1.S1_at--1073--1371Chr08:22555879..22555903 (25 bp)
AGAGCCTCGACTTCAATGCACTTAT
LOC_Os08g36000
OsAffx.29545.1.S1_at--1134--4951Chr08:22555466..22555486 (21 bp)
GCATCAGTTCAGTGATAATCCACCA
LOC_Os08g36000
OsAffx.29545.1.S1_at--190--10391Chr08:22555357..22555381 (25 bp)
TTTTCTATACTAAGATGTGCCCCAA
LOC_Os08g36000
Target Sequence 
TTCTCCTCGAATTGTCTCTCGACAACGTGCACAGCTTCCACCACTCGGAGGTGTGGTTCGTCCGGGGACCAAACATCCGG
TCCCTTAGGATTTGGGCAGTTGATCAGGATTTTGGCTGCAGGATAGGGGAGCTCCCGCGTCTGGAGGATGCTGTCATCTT
CTTGGATTCAGAAGTCACCACTCAAGTCTTGTGCAAAACTTTGGAAGGGATTGCTCATGTGGAGAGCCTCGACTTCAATG
CACTTATGCATCAGTTCAGTGATAATCCACCAGAGAGGTTTTCATTCACATTTCAGAACTTGAGGTCATTAGACCTGCAT
GCTTGTCTAGACCAAATTTCAAGTACTTCATTGGTTTTTTCTATACTAAGATGTGCCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis