Browse Element(s) Details


Os.52936.1.S1_at

Description gb:AK069998.1
DB_XREF= gi:32980022
TID=Os.52936.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040F09, full insert sequence.
FL= gb:AK069998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3594811/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35900Os.27498.1.S1_at11/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35900Os.19061.2.S1_at1/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35910OsAffx.17353.2.S1_at11/118+22514524..22520039expressed protein
LOC_Os08g35920Os.25411.1.A1_at1/118+22520415..22522141transposon protein, putative, Pong sub-class
LOC_Os08g35930Os.24413.1.S1_at11/118+22523447..22526710F-box domain containing protein, expressed
LOC_Os08g35939OsAffx.17354.1.S1_at11/118+22527729..22537140expressed protein
LOC_Os08g35939OsAffx.17354.1.S1_x_at11/118+22527729..22537140expressed protein
LOC_Os08g35939Os.52674.1.S1_at10/118+22527729..22537140expressed protein
LOC_Os08g35948Os.52936.1.S1_at11/118+22537718..22542745expressed protein
LOC_Os08g35960Os.24503.1.S1_x_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35960Os.24503.2.S1_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35970OsAffx.8061.1.S1_at9/118+22547210..22550393transposon protein, putative, Mutator sub-class
LOC_Os08g35980Os.48030.1.A1_at10/118+22550767..22551650hypothetical protein
LOC_Os08g35990OsAffx.29544.1.S1_x_at10/118+22552391..22553375hypothetical protein
LOC_Os08g36000OsAffx.29545.1.S1_at11/118+22555060..22556693F-box domain containing protein
LOC_Os08g36010Os.51858.1.S1_at11/118+22559509..22561488F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52936.1.S1_at--1021--151Chr08:22537973..22537997 (25 bp)
ATTATTACATTTGAGTGACGAGCAC
LOC_Os08g35948
Os.52936.1.S1_at--1111--5771Chr08:22537957..22537981 (25 bp)
GACGAGCACTATTGATGTGGATCTA
LOC_Os08g35948
Os.52936.1.S1_at--954--8511Chr08:22537916..22537940 (25 bp)
TGGACCGTGGTCAAGTACACTTTCC
LOC_Os08g35948
Os.52936.1.S1_at--445--10211Chr08:22537890..22537914 (25 bp)
TATTACTTTCTGAGAGCCGCTGGGA
LOC_Os08g35948
Os.52936.1.S1_at--206--5871Chr08:22537877..22537901 (25 bp)
GAGCCGCTGGGAAACCACAGCTTAA
LOC_Os08g35948
Os.52936.1.S1_at--832--6731Chr08:22537843..22537867 (25 bp)
GTTCATTACTGGACATAAATCCGGT
LOC_Os08g35948
Os.52936.1.S1_at--1139--9271Chr08:22537824..22537848 (25 bp)
TCCGGTAATATTAGTTGTGGGTGTC
LOC_Os08g35948
Os.52936.1.S1_at--675--7711Chr08:22537806..22537830 (25 bp)
GGGTGTCAAATTTGCATAAAGTCTT
LOC_Os08g35948
Os.52936.1.S1_at--349--7131Chr08:22537786..22537810 (25 bp)
GTCTTGTAATACCAATCTTCCTGGA
LOC_Os08g35948
Os.52936.1.S1_at--430--3631Chr08:22537770..22537794 (25 bp)
CTTCCTGGAAGATCAAACAATGTTT
LOC_Os08g35948
Os.52936.1.S1_at--541--4051Chr08:22537734..22537758 (25 bp)
CGAGTGATTATCCTAACACCAAATA
LOC_Os08g35948
Target Sequence 
ATTATTACATTTGAGTGACGAGCACTATTGATGTGGATCTAGATAACATCTTTTACATGGACCGTGGTCAAGTACACTTT
CCATATTACTTTCTGAGAGCCGCTGGGAAACCACAGCTTAATTGTTAAGTGTTCATTACTGGACATAAATCCGGTAATAT
TAGTTGTGGGTGTCAAATTTGCATAAAGTCTTGTAATACCAATCTTCCTGGAAGATCAAACAATGTTTACAGTAATTTTC
GAGTGATTATCCTAACACCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis