Browse Element(s) Details


Os.24413.1.S1_at

Description gb:AK065651.1
DB_XREF= gi:32975669
TID=Os.24413.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036L03, full insert sequence.
FL= gb:AK065651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3593011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35870OsAffx.17353.1.S1_x_at11/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35870Os.18069.1.S1_at10/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35880OsAffx.6040.1.S1_at11/118+22501437..22505556F-box domain containing protein, expressed
LOC_Os08g35900Os.27498.1.S1_at11/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35900Os.19061.2.S1_at1/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35910OsAffx.17353.2.S1_at11/118+22514524..22520039expressed protein
LOC_Os08g35920Os.25411.1.A1_at1/118+22520415..22522141transposon protein, putative, Pong sub-class
LOC_Os08g35930Os.24413.1.S1_at11/118+22523447..22526710F-box domain containing protein, expressed
LOC_Os08g35939OsAffx.17354.1.S1_at11/118+22527729..22537140expressed protein
LOC_Os08g35939OsAffx.17354.1.S1_x_at11/118+22527729..22537140expressed protein
LOC_Os08g35939Os.52674.1.S1_at10/118+22527729..22537140expressed protein
LOC_Os08g35948Os.52936.1.S1_at11/118+22537718..22542745expressed protein
LOC_Os08g35960Os.24503.1.S1_x_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35960Os.24503.2.S1_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35970OsAffx.8061.1.S1_at9/118+22547210..22550393transposon protein, putative, Mutator sub-class
LOC_Os08g35980Os.48030.1.A1_at10/118+22550767..22551650hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24413.1.S1_at--61--6371Chr08:22523950..22523974 (25 bp)
GATCCTGCTGACAATGTTGCTGCTA
LOC_Os08g35930
Os.24413.1.S1_at--1143--6671Chr08:22523935..22523959 (25 bp)
GTTGCTGCTAATGTACCTGAGGATT
LOC_Os08g35930
Os.24413.1.S1_at--765--6571Chr08:22523914..22523938 (25 bp)
GATTCTCGAGAAGGCCATGCTACTT
LOC_Os08g35930
Os.24413.1.S1_at--1076--611Chr08:22523883..22523907 (25 bp)
ATGCTGATGTTCATGTCCGTTCTCC
LOC_Os08g35930
Os.24413.1.S1_at--788--6711Chr08:22523865..22523889 (25 bp)
GTTCTCCAATAGACTTCGTTGCCAA
LOC_Os08g35930
Os.24413.1.S1_at--695--4431Chr08:22523775..22523799 (25 bp)
GCCATTTCTGTACTTCCTTTTGATG
LOC_Os08g35930
Os.24413.1.S1_at--788--8951Chr08:22523734..22523758 (25 bp)
TGACACCCCTCGATGGTGGAACTTA
LOC_Os08g35930
Os.24413.1.S1_at--1105--5671Chr08:22523551..22523575 (25 bp)
GACATTTGGGTTCACACTGCAGTTT
LOC_Os08g35930
Os.24413.1.S1_at--629--5031Chr08:22523533..22523557 (25 bp)
GCAGTTTTCGCTTTCGGCACATATA
LOC_Os08g35930
Os.24413.1.S1_at--416--9771Chr08:22523510..22523534 (25 bp)
TAAGAACCCACTGTCCAGTTGGAGG
LOC_Os08g35930
Os.24413.1.S1_at--194--8031Chr08:22523490..22523514 (25 bp)
GGAGGTTTCCAATCGCACAGCTGAA
LOC_Os08g35930
Target Sequence 
GATCCTGCTGACAATGTTGCTGCTAATGTACCTGAGGATTCTCGAGAAGGCCATGCTACTTCNGGTGATGCTGATGTTCA
TGTCCGTTCTCCAATAGACTTCGTTGCCAAATGTGTTGGGAATGGTTGTGCAGAATCTCCAGAAGACCAAATCTGACGAG
AGTTTCATGATTCTAGCCATTTCTGTACTTCCTTTTGATGTGAAATTTTNAGTTCTTGACACCCCTCGATGGTGGAACTT
AACAGCTAGGTTATGATCTGTTGATAAACATTGCATAGCCAATTTAGTCGGGTAAGGGAAGGCAGCGACAGTTTTTGGAT
GAACAAATACACAAATTCACGATGGTACTCTAGTTATAGATTGACAGCCTTTGGATGAACAAANACTGCTTTTGGAATTG
ACATTTGGGTTCACACTGCAGTTTTCGCTTTCGGCACATATAAGAACCCACTGTCCAGTTGGAGGTTTCCAATCGCACAG
CTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis