Browse Element(s) Details


OsAffx.17353.1.S1_x_at

Description tigr:9636.m03607
TID=OsAffx.17353.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3587011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35840OsAffx.6039.1.S1_at11/118+22466438..22467180hypothetical protein
LOC_Os08g35850OsAffx.17351.1.S1_at11/118+22474970..22475515hypothetical protein
LOC_Os08g35860Os.27224.2.A1_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35860OsAffx.29543.1.S1_x_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35870OsAffx.17353.1.S1_x_at11/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35870Os.18069.1.S1_at10/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35880OsAffx.6040.1.S1_at11/118+22501437..22505556F-box domain containing protein, expressed
LOC_Os08g35900Os.27498.1.S1_at11/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35900Os.19061.2.S1_at1/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35910OsAffx.17353.2.S1_at11/118+22514524..22520039expressed protein
LOC_Os08g35920Os.25411.1.A1_at1/118+22520415..22522141transposon protein, putative, Pong sub-class
LOC_Os08g35930Os.24413.1.S1_at11/118+22523447..22526710F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17353.1.S1_x_at--1010--711Chr08:22493014..22493038 (25 bp)
ATGTTCGTCTTTCATTCTACGCTAT
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--876--551Chr08:22492951..22492975 (25 bp)
ATCCGAGAACTTCATCTGATGCTGA
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--747--5731Chr08:22492212..22492236 (25 bp)
GACTGTCCTGAGTTTCCAGAGCTAA
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--556--9231Chr08:22492078..22492207 (25 bp)
TCCTCATCAACCCATCTTAAATTCA
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--701--8851Chr08:22492000..22492024 (25 bp)
TGATCCTGTCAGTAACGGTGTTGGC
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--983--1331Chr08:22491955..22491979 (25 bp)
AGAGGGCCATATCGTCAACCATGTT
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--124--9771Chr08:22491922..22491946 (25 bp)
TAATGCTGATTCTCCAGAGGGCCAT
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--466--7971Chr08:22491892..22491916 (25 bp)
GGATCGGGAGGCGACAGACTCTCAT
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--1074--491Chr08:22491864..22491888 (25 bp)
ATCGTCCATGGTTCTGTCAGTGCCG
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--9--6411Chr08:22491835..22491859 (25 bp)
GATCTGGAGCAGACCATGCTTGCTA
LOC_Os08g35870
OsAffx.17353.1.S1_x_at--446--9071Chr08:22491819..22491843 (25 bp)
TGCTTGCTAGTCGTAGGTGCACTCG
LOC_Os08g35870
Target Sequence 
ATGTTCGTCTTTCATTCTACGCTATATGCAGTAATGAGGAGGCAGTTATTGATATAGCAGAATATCCGAGAACTTCATCT
GATGCTGAGATCATCTTCATGGAATGTGGCATTGACTGTCCTGAGTTTCCAGAGCTAACAGCTCCTCATCAACCCATCTT
AAATTCAAGTCTTATACAACTTTTGATGTTAAAGGCCATGCTCAGACAAGGAGACATTACTGATCCTGTCAGTAACGGTG
TTGGCAATGCACATGTGTATTCTGAAGAGGGCCATATCGTCAACCATGTTGCCAATGTTAATGCTGATTCTCCAGAGGGC
CATGTCTGGGATCGGGAGGCGACAGACTCTCATCCCATCGTCCATGGTTCTGTCAGTGCCGTGCAGATCTGGAGCAGACC
ATGCTTGCTAGTCGTAGGTGCACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17353.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis