Browse Element(s) Details


OsAffx.6039.1.S1_at

Description tigr:9636.m03604
TID=OsAffx.6039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3584011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35800Os.28943.1.S1_x_at2/118+22444912..22448126retrotransposon protein, putative, unclassified
LOC_Os08g35810NANA8+22448748..22454950retrotransposon protein, putative, unclassified
LOC_Os08g35820Os.37083.2.S1_at1/118+22455582..22458946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35830Os.47463.1.S1_x_at5/118+22460570..22465439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35830Os.14491.2.S1_x_at4/118+22460570..22465439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35840OsAffx.6039.1.S1_at11/118+22466438..22467180hypothetical protein
LOC_Os08g35850OsAffx.17351.1.S1_at11/118+22474970..22475515hypothetical protein
LOC_Os08g35860Os.27224.2.A1_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35860OsAffx.29543.1.S1_x_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35870OsAffx.17353.1.S1_x_at11/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35870Os.18069.1.S1_at10/118+22491626..22500996F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6039.1.S1_at--861--371Chr08:22467126..22467150 (25 bp)
ATCAACATTCTCAGTGTGCGCACAG
LOC_Os08g35840
OsAffx.6039.1.S1_at--1088--6911Chr08:22467086..22467110 (25 bp)
GTAGGCCGGTTGTCCTCAGATCTAG
LOC_Os08g35840
OsAffx.6039.1.S1_at--122--6431Chr08:22467068..22467092 (25 bp)
GATCTAGGCAGAGAGCGACCTCGCT
LOC_Os08g35840
OsAffx.6039.1.S1_at--82--4631Chr08:22467039..22467063 (25 bp)
GCGAGGAATTGGTGCCGCCGACCAT
LOC_Os08g35840
OsAffx.6039.1.S1_at--899--6491Chr08:22466844..22466868 (25 bp)
GATATGTTCGATGGCTACCACACCA
LOC_Os08g35840
OsAffx.6039.1.S1_at--123--8331Chr08:22466810..22466834 (25 bp)
GGCTCGTTGAGCTCTACTTTGCAAG
LOC_Os08g35840
OsAffx.6039.1.S1_at--233--5171Chr08:22466790..22466814 (25 bp)
GCAAGCGATGTGTCCATTGGTGTTC
LOC_Os08g35840
OsAffx.6039.1.S1_at--154--9651Chr08:22466585..22466773 (25 bp)
TCAGCAACCCCATGATCTAGGACCT
LOC_Os08g35840
OsAffx.6039.1.S1_at--796--6591Chr08:22466548..22466572 (25 bp)
GTTGTCCTCGGATCTAGGCGGAAAG
LOC_Os08g35840
OsAffx.6039.1.S1_at--31--911Chr08:22466533..22466557 (25 bp)
AGGCGGAAAGCAACCTCACTGGCAA
LOC_Os08g35840
OsAffx.6039.1.S1_at--708--5151Chr08:22466512..22466536 (25 bp)
GCAACGAGGAACTGGCGCTGCCTGT
LOC_Os08g35840
Target Sequence 
ATCAACATTCTCAGTGTGCGCACAGATCGGGGACCATGCGGTAGGCCGGTTGTCCTCAGATCTAGGCAGAGAGCGACCTC
GCTGACGGCGAGGAATTGGTGCCGCCGACCATGGCTGAGGGAGAAAGGAGGATATTTTTGGCGTGGTGAAGGGAAACGAT
TGAAAGGCGAGCGCATGAAAGGGAAGAGGTGGTCTACAGGGCATGGATGGTTGGTGGTGGTACAGATGACAGGGCGACAA
CGGAGGTTATGGACTTGTGGTTGTGCCGTCGGCTTTAGGGGAGATATGTTCGATGGCTACCACACCATCCGCGACGGGCT
CGTTGAGCTCTACTTTGCAAGCGATGTGTCCATTGGTGTTCTCGGCATGCACGCAGATCAGCAACCCCATGATCTAGGAC
CTCGCGGTGGGTTGGTTGTCCTCGGATCTAGGCGGAAAGCAACCTCACTGGCAACGAGGAACTGGCGCTGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis