Browse Element(s) Details


Os.18069.1.S1_at

Description gb:AK072930.1
DB_XREF= gi:32982953
TID=Os.18069.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144M06, full insert sequence.
FL= gb:AK072930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3587010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35840OsAffx.6039.1.S1_at11/118+22466438..22467180hypothetical protein
LOC_Os08g35850OsAffx.17351.1.S1_at11/118+22474970..22475515hypothetical protein
LOC_Os08g35860Os.27224.2.A1_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35860OsAffx.29543.1.S1_x_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35870OsAffx.17353.1.S1_x_at11/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35870Os.18069.1.S1_at10/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35880OsAffx.6040.1.S1_at11/118+22501437..22505556F-box domain containing protein, expressed
LOC_Os08g35900Os.27498.1.S1_at11/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35900Os.19061.2.S1_at1/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35910OsAffx.17353.2.S1_at11/118+22514524..22520039expressed protein
LOC_Os08g35920Os.25411.1.A1_at1/118+22520415..22522141transposon protein, putative, Pong sub-class
LOC_Os08g35930Os.24413.1.S1_at11/118+22523447..22526710F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18069.1.S1_at--92--3891Chr08:22492133..22492157 (25 bp)
CTGTAACATGTATTTCCTTGATTCC
LOC_Os08g35870
Os.18069.1.S1_at--1052--4311Chr08:22492118..22492142 (25 bp)
CCTTGATTCCTACTACTTTTGATGA
LOC_Os08g35870
Os.18069.1.S1_at--1073--5611Chr08:22492082..22492106 (25 bp)
GACAACAATTGCAGCCCATCTTAAA
LOC_Os08g35870
Os.18069.1.S1_at--276--6891Chr08:22491773..22491797 (25 bp)
GTATATTCTAGTAACCTGTATCTTT
LOC_Os08g35870
Os.18069.1.S1_at--540--431Chr08:22491754..22491778 (25 bp)
ATCTTTTATTTCTTCCTGAACCCTG
LOC_Os08g35870
Os.18069.1.S1_at--322--5451Chr08:22491737..22491761 (25 bp)
GAACCCTGATGTTATTCTGTTTTCT
LOC_Os08g35870
Os.18069.1.S1_at--150--9471Chr08:22491715..22491739 (25 bp)
TCTGTCACCCTGGAGTATACTGTAT
LOC_Os08g35870
Os.18069.1.S1_at--593--71Chr08:22491692..22491716 (25 bp)
ATTGCTGATCTACATACTAGTTGCT
LOC_Os08g35870
Os.18069.1.S1_at--387--331Chr08:22491679..22491703 (25 bp)
ATACTAGTTGCTTCTACTTGGGAGC
LOC_Os08g35870
Os.18069.1.S1_at--515--251Chr08:22491649..22491673 (25 bp)
ATATGCTCGGTTTATCGTTTCCTGA
LOC_Os08g35870
Os.18069.1.S1_at--1004--7931Chr08:22491619..22491643 (25 bp)
GGATTATCTCATTACCCCATGAGTT
NONE
Target Sequence 
CTGTAACATGTATTTCCTTGATTCCTACTACTTTTGATGATAATTTTATGTGACAACAATTGCAGCCCATCTTAAATTCA
AGTCTTATACAACTTTTGATGTTAAAGGCCATGCTCAGACAAGGAGACATTACTGATCCTGTCAGTAACGGTGTTGGCAA
TGCACATGTGTATTCTGAAGAGGGCCATATCGTCAACCATGTTGCCAATGTTAATGCTGATTCTCCAGAGGGCCATGTCT
GGGATCGGGAGGCGACAGACTCTCATCCCATCGTCCATGGTTCTGTCAGTGCCGTGCAGATCTGGAGCAGACCATGCTTG
CTAGTCGTAGGTGCACTCGCTGTCTTTTGTGATTATACTAGTATATTCTAGTAACCTGTATCTTTTATTTCTTCCTGAAC
CCTGATGTTATTCTGTTTTCTGTCACCCTGGAGTATACTGTATTGCTGATCTACATACTAGTTGCTTCTACTTGGGAGCA
ATACATATGCTCGGTTTATCGTTTCCTGATTAATGGATTATCTCATTACCCCATGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis