Browse Element(s) Details


OsAffx.6040.1.S1_at

Description tigr:9636.m03608
TID=OsAffx.6040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3588011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35860Os.27224.2.A1_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35860OsAffx.29543.1.S1_x_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35870OsAffx.17353.1.S1_x_at11/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35870Os.18069.1.S1_at10/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35880OsAffx.6040.1.S1_at11/118+22501437..22505556F-box domain containing protein, expressed
LOC_Os08g35900Os.27498.1.S1_at11/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35900Os.19061.2.S1_at1/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35910OsAffx.17353.2.S1_at11/118+22514524..22520039expressed protein
LOC_Os08g35920Os.25411.1.A1_at1/118+22520415..22522141transposon protein, putative, Pong sub-class
LOC_Os08g35930Os.24413.1.S1_at11/118+22523447..22526710F-box domain containing protein, expressed
LOC_Os08g35939OsAffx.17354.1.S1_at11/118+22527729..22537140expressed protein
LOC_Os08g35939OsAffx.17354.1.S1_x_at11/118+22527729..22537140expressed protein
LOC_Os08g35939Os.52674.1.S1_at10/118+22527729..22537140expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6040.1.S1_at--347--1271Chr08:22502408..22502432 (25 bp)
AGATCACTCGATACTGTTAACCCTC
LOC_Os08g35880
OsAffx.6040.1.S1_at--201--1371Chr08:22502298..22502322 (25 bp)
AGAGCACCACATGCGTAGGATGCAA
LOC_Os08g35880
OsAffx.6040.1.S1_at--759--2731Chr08:22502088..22502112 (25 bp)
AATGCAACCTTCACCAATTTAGCCT
LOC_Os08g35880
OsAffx.6040.1.S1_at--459--371Chr08:22502044..22502066 (23 bp)
ATCAATGCTGTCATCTCATACGGCT
LOC_Os08g35880
OsAffx.6040.1.S1_at--226--5991Chr08:22501685..22501709 (25 bp)
GAGACACTCCAGTTGATCCTGTTGA
LOC_Os08g35880
OsAffx.6040.1.S1_at--428--4751Chr08:22501608..22501632 (25 bp)
GCTGATGCTCATGTTGGTTCTCCAA
LOC_Os08g35880
OsAffx.6040.1.S1_at--200--4391Chr08:22501572..22501596 (25 bp)
GCCAATGGTGCTCCGAATGGTTTTG
LOC_Os08g35880
OsAffx.6040.1.S1_at--229--10231Chr08:22501552..22501576 (25 bp)
TTTTGCGGATTCTCCAGAAGGCCAT
LOC_Os08g35880
OsAffx.6040.1.S1_at--832--5291Chr08:22501536..22501560 (25 bp)
GAAGGCCATATCTGACTGGAGTTTC
LOC_Os08g35880
OsAffx.6040.1.S1_at--470--3611Chr08:22501500..22501524 (25 bp)
CATTGGTGTACTTTCATTGGCTGTG
LOC_Os08g35880
OsAffx.6040.1.S1_at--1102--1231Chr08:22501467..22501491 (25 bp)
AGTTGTCAACATCCTCGACTGTGGA
LOC_Os08g35880
Target Sequence 
AGATCACTCGATACTGTTAACCCTCGGAGAAGGCAGCGGTTGAATGGGGAGTCTGTAGCTCAGCTGCAACAGCTTGAGGA
GCAGCTGTTAGAGTTGGAAAAGGAGGAGGAAGAGCACCACATGCGTAGGATGCAAGCATTGAATGAGATGGACCAGGAGA
GTGAAAATGTCTTTAGACATCAAGAGTACATCATATCTACAATTGAGTTTCTGTCTAAACAATGCAACCTTCACCAATTT
AGCCTTCCCCCATGGCCAGGACGGCCATCAATGCTGTCATCTCATACGGCTACCACCGGACCAGGAGACACTCCAGTTGA
TCCTGTTGATAATGCCGATGTACATGTGGATTCTCAAGAAGACCATGCCACTCTTGATGCTGCTGATGCTCATGTTGGTT
CTCCAACAAAGAATGTTGCCAATGGTGCTCCGAATGGTTTTGCGGATTCTCCAGAAGGCCATATCTGACTGGAGTTTCAT
GATACTAGTCATTGGTGTACTTTCATTGGCTGTGAAATTTTCAGTTGTCAACATCCTCGACTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis