Browse Element(s) Details


Os.27224.2.A1_at

Description gb:AK103510.1
DB_XREF= gi:32988719
TID=Os.27224.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131F09, full insert sequence.
FL= gb:AK103510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3586011/11Cytokinin dehydrogenase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35820Os.37083.2.S1_at1/118+22455582..22458946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35830Os.47463.1.S1_x_at5/118+22460570..22465439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35830Os.14491.2.S1_x_at4/118+22460570..22465439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35840OsAffx.6039.1.S1_at11/118+22466438..22467180hypothetical protein
LOC_Os08g35850OsAffx.17351.1.S1_at11/118+22474970..22475515hypothetical protein
LOC_Os08g35860Os.27224.2.A1_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35860OsAffx.29543.1.S1_x_at11/118+22483942..22486882Cytokinin dehydrogenase 7, putative, expressed
LOC_Os08g35870OsAffx.17353.1.S1_x_at11/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35870Os.18069.1.S1_at10/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35880OsAffx.6040.1.S1_at11/118+22501437..22505556F-box domain containing protein, expressed
LOC_Os08g35900Os.27498.1.S1_at11/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35900Os.19061.2.S1_at1/118+22507839..22513277F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046420
GO:0009823biological_processcytokinin catabolism
GO:0005773cellular_componentvacuole
GO:0008131molecular_functionamine oxidase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27224.2.A1_at--442--4211Chr08:22484312..22484336 (25 bp)
CCGCCGTGATCGTGTAAGAGACGGA
LOC_Os08g35860
Os.27224.2.A1_at--109--511Chr08:22484304..22484328 (25 bp)
ATCGTGTAAGAGACGGATGATCGAC
LOC_Os08g35860
Os.27224.2.A1_at--588--6391Chr08:22484286..22484310 (25 bp)
GATCGACGATGGTGATTATGCTGTT
LOC_Os08g35860
Os.27224.2.A1_at--631--4091Chr08:22484283..22484307 (25 bp)
CGACGATGGTGATTATGCTGTTTGC
LOC_Os08g35860
Os.27224.2.A1_at--118--1891Chr08:22484281..22484305 (25 bp)
ACGATGGTGATTATGCTGTTTGCTG
LOC_Os08g35860
Os.27224.2.A1_at--415--7411Chr08:22484275..22484299 (25 bp)
GTGATTATGCTGTTTGCTGGGTTAA
LOC_Os08g35860
Os.27224.2.A1_at--241--6551Chr08:22484273..22484297 (25 bp)
GATTATGCTGTTTGCTGGGTTAATT
LOC_Os08g35860
Os.27224.2.A1_at--121--10131Chr08:22484270..22484294 (25 bp)
TATGCTGTTTGCTGGGTTAATTCTG
LOC_Os08g35860
Os.27224.2.A1_at--29--632Chr10:3282729..3283118 (25 bp)
ATGCTGTTTGCTGGGTTAATTCTGG
NONE
Os.27224.2.A1_at--229--4731Chr08:22484267..22484291 (25 bp)
GCTGTTTGCTGGGTTAATTCTGGAT
LOC_Os08g35860
Os.27224.2.A1_at--470--3871Chr08:22484266..22484290 (25 bp)
CTGTTTGCTGGGTTAATTCTGGATG
LOC_Os08g35860
Target Sequence 
CCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27224.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis