Browse Element(s) Details


OsAffx.17353.2.S1_at

Description tigr:9636.m03612
TID=OsAffx.17353.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3591011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35870OsAffx.17353.1.S1_x_at11/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35870Os.18069.1.S1_at10/118+22491626..22500996F-box domain containing protein, expressed
LOC_Os08g35880OsAffx.6040.1.S1_at11/118+22501437..22505556F-box domain containing protein, expressed
LOC_Os08g35900Os.27498.1.S1_at11/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35900Os.19061.2.S1_at1/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35910OsAffx.17353.2.S1_at11/118+22514524..22520039expressed protein
LOC_Os08g35920Os.25411.1.A1_at1/118+22520415..22522141transposon protein, putative, Pong sub-class
LOC_Os08g35930Os.24413.1.S1_at11/118+22523447..22526710F-box domain containing protein, expressed
LOC_Os08g35939OsAffx.17354.1.S1_at11/118+22527729..22537140expressed protein
LOC_Os08g35939OsAffx.17354.1.S1_x_at11/118+22527729..22537140expressed protein
LOC_Os08g35939Os.52674.1.S1_at10/118+22527729..22537140expressed protein
LOC_Os08g35948Os.52936.1.S1_at11/118+22537718..22542745expressed protein
LOC_Os08g35960Os.24503.1.S1_x_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35960Os.24503.2.S1_at11/118+22542928..22546470F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17353.2.S1_at--863--3651Chr08:22516766..22516790 (25 bp)
CTTCTTCTGGCGTCACTTGTAGTAA
LOC_Os08g35910
OsAffx.17353.2.S1_at--300--831Chr08:22515133..22515156 (24 bp)
ATGGTTACATGGACACTCCCAGTGT
LOC_Os08g35910
OsAffx.17353.2.S1_at--357--7951Chr08:22515073..22515097 (25 bp)
GGATAGATCTTGCACATCCTTGCAA
LOC_Os08g35910
OsAffx.17353.2.S1_at--559--3211Chr08:22514961..22514985 (25 bp)
CAAGGAGATGGCACAGGCTCTTCAT
LOC_Os08g35910
OsAffx.17353.2.S1_at--627--10711Chr08:22514921..22514945 (25 bp)
TTGCTAAACTACTTCGCTGCAGTTA
LOC_Os08g35910
OsAffx.17353.2.S1_at--1148--9791Chr08:22514808..22514904 (25 bp)
TAACCTAAAGTATCTGTCTGAGCAA
LOC_Os08g35910
OsAffx.17353.2.S1_at--896--8911Chr08:22514757..22514781 (25 bp)
TGAGCCTTCGTCAGTCTCATCATCT
LOC_Os08g35910
OsAffx.17353.2.S1_at--915--6611Chr08:22514632..22514656 (25 bp)
GTTGGCAGAAGCTCTTACCGATCCT
LOC_Os08g35910
OsAffx.17353.2.S1_at--32--571Chr08:22514612..22514636 (25 bp)
ATCCTGCCAGTCGTAGTGCTGACAA
LOC_Os08g35910
OsAffx.17353.2.S1_at--926--2711Chr08:22514582..22514606 (25 bp)
AAGCAGATTCTCGAGCTGACCAGGT
LOC_Os08g35910
OsAffx.17353.2.S1_at--1139--5831Chr08:22514565..22514589 (25 bp)
GACCAGGTAGCCATTGGTGCTTCCA
LOC_Os08g35910
Target Sequence 
CTTCTTCTGGCGTCACTTGTAGTAATGAGCAGGCTTTTATAACAGAACATCCGAGAGTTTCACCTGATGCACAAGTCATC
TTCATGAATAGAGAATCTGCAAACAATGGTTACATGGACACTCCCAGTGTTAATTATAAGTTGGAAACAACAAGAACAGG
CAACTGGATAGATCTTGCACATCCTTGCAAAATTAATCGGTTGGATCTAGATGCCGTGGATCAGCATAAACATATTGAGG
AGATGTTGCTAATACGGCAAAAGTTACTGAAAGAACGCAAGGAGATGGCACAGGCTCTTCATGAAGATAAGAAGCTTTTG
CTAAACTACTTCGCTGCAGTTAAAAAATACTTCACTTCTAACCTAAAGTATCTGTCTGAGCAATTGAACATTTCCATTCC
ACCATTTCCTGAGCCTTCGTCAGTCTCATCATCTTCCCATCCTACCTCGCCCAGGTTGGCAGAAGCTCTTACCGATCCTG
CCAGTCGTAGTGCTGACAATGTGCAAGCAGATTCTCGAGCTGACCAGGTAGCCATTGGTGCTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17353.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis