Browse Element(s) Details


Os.51858.1.S1_at

Description gb:AK064101.1
DB_XREF= gi:32974119
TID=Os.51858.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A02, full insert sequence.
FL= gb:AK064101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3601011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35939OsAffx.17354.1.S1_at11/118+22527729..22537140expressed protein
LOC_Os08g35939OsAffx.17354.1.S1_x_at11/118+22527729..22537140expressed protein
LOC_Os08g35939Os.52674.1.S1_at10/118+22527729..22537140expressed protein
LOC_Os08g35948Os.52936.1.S1_at11/118+22537718..22542745expressed protein
LOC_Os08g35960Os.24503.1.S1_x_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35960Os.24503.2.S1_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35970OsAffx.8061.1.S1_at9/118+22547210..22550393transposon protein, putative, Mutator sub-class
LOC_Os08g35980Os.48030.1.A1_at10/118+22550767..22551650hypothetical protein
LOC_Os08g35990OsAffx.29544.1.S1_x_at10/118+22552391..22553375hypothetical protein
LOC_Os08g36000OsAffx.29545.1.S1_at11/118+22555060..22556693F-box domain containing protein
LOC_Os08g36010Os.51858.1.S1_at11/118+22559509..22561488F-box domain containing protein, expressed
LOC_Os08g36020Os.47915.1.S1_at11/118+22569216..22574706major intrinsic protein, putative, expressed
LOC_Os08g36030Os.55819.1.S1_at10/118+22578497..22579770Plant viral-response family protein, expressed
LOC_Os08g36040OsAffx.2532.2.S1_at11/118+22582566..22583492Plant viral-response family protein, expressed
LOC_Os08g36050OsAffx.29547.1.S1_at11/118+22585660..22586944hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51858.1.S1_at--910--7011Chr08:22560259..22560283 (25 bp)
GTACTTCTTGGGTCTTTTGCATACT
LOC_Os08g36010
Os.51858.1.S1_at--117--3511Chr08:22560240..22560264 (25 bp)
CATACTTAGAAGTGCCCCGAACCTG
LOC_Os08g36010
Os.51858.1.S1_at--706--1431Chr08:22559840..22559864 (25 bp)
AGAACTGTTCTCTGTTCGTGTCACC
LOC_Os08g36010
Os.51858.1.S1_at--1036--7431Chr08:22559823..22559847 (25 bp)
GTGTCACCTCCAGTAGGTTATCTTA
LOC_Os08g36010
Os.51858.1.S1_at--684--1531Chr08:22559762..22559786 (25 bp)
AGCATCGCCGTTAGCTAAGCTCAGA
LOC_Os08g36010
Os.51858.1.S1_at--961--3731Chr08:22559748..22559772 (25 bp)
CTAAGCTCAGACTCATCCGTGGATG
LOC_Os08g36010
Os.51858.1.S1_at--685--6311Chr08:22559727..22559751 (25 bp)
GATGACTGGCTAGCTTGACTTTGCA
LOC_Os08g36010
Os.51858.1.S1_at--786--10731Chr08:22559707..22559731 (25 bp)
TTGCAGAGCACCTGAACTTCTCATG
LOC_Os08g36010
Os.51858.1.S1_at--1019--5211Chr08:22559622..22559646 (25 bp)
GAATTTCCATCAGGCAACATGCATG
LOC_Os08g36010
Os.51858.1.S1_at--340--7831Chr08:22559572..22559596 (25 bp)
GGTAATGCATACTGCTTGCCTATAT
LOC_Os08g36010
Os.51858.1.S1_at--789--9071Chr08:22559526..22559550 (25 bp)
TGCCTTCCCATTGTTATTAATTCCC
LOC_Os08g36010
Target Sequence 
GTACTTCTTGGGTCTTTTGCATACTTAGAAGTGCCCCGAACCTGGAAACACTTGAAATCGAGGTTGATTGTGATGATGAT
GAAGTGGATGCTGGATCTGTCGAAGGATTCGCAAACGCACAAGCAAGTGATGACATTTTCCCTAGACTTCGAGATGTCTG
GTTACATAGTATTGACTGCTCCNTCAAATGAGATGTGCTTCATCAAGTTTGTCCTATCCAAAGCAAGATCGCTAGAACTG
TTCTCTGTTCGTGTCACCTCCAGTAGGTTATCTTATCAGGAGGCATGCATAGAGATGGCAAAATACAAAAGAGCATCGCC
GTTAGCTAAGCTCAGACTCATCCGTGGATGACTGGCTAGCTTGACTTTGCAGAGCACCTGAACTTCTCATGCTTTTTCAT
CCCATTGTTTGTATTCAGTGAAAGATATCTCTGTTGAACTGTGTGGATGTTGAATTTCCATCAGGCAACATGCATGACAT
CTGCAATAGTGTGCCTATGTAGGTAATGCATACTGCTTGCCTATATATTTTGATGAAGTTTAAATAATGCCTTCCCATTG
TTATTAATTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis