Browse Element(s) Details


Os.46663.1.S1_x_at

Description gb:AK121098.1
DB_XREF= gi:37990721
TID=Os.46663.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0093B11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069E11, full insert sequence.
FL= gb:AK121098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3403011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33990NANA10+17800160..17800743expressed protein
LOC_Os10g34000Os.46867.2.S1_x_at11/1110+17811393..17813051aquaporin PIP2.4, putative
LOC_Os10g34010NANA10+17815487..17815951hypothetical protein
LOC_Os10g34020Os.39228.1.S1_at11/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34020Os.46635.1.S1_x_at1/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34030Os.46663.1.S1_x_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34030Os.50626.1.S1_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34040OsAffx.20242.2.S1_at11/1110+17839517..17842712nodulin, putative, expressed
LOC_Os10g34050OsAffx.30663.1.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.1.S1_x_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.2.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.8016.1.S1_x_at1/1110+17843253..17845651hypothetical protein
LOC_Os10g34057NANA10+17846411..17846700NA

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46663.1.S1_x_at--997--1571Chr10:17821746..17821770 (25 bp)
AGCTCAACTGAATTGGCTCACGTAT
LOC_Os10g34030
Os.46663.1.S1_x_at--161--7991Chr10:17821708..17821732 (25 bp)
GGATGAGACTCTCGGACGACTTGTT
LOC_Os10g34030
Os.46663.1.S1_x_at--210--8111Chr10:17821695..17821719 (25 bp)
GGACGACTTGTTGCATACCTCAGCT
LOC_Os10g34030
Os.46663.1.S1_x_at--773--4291Chr10:17821678..17821702 (25 bp)
CCTCAGCTCTCGTGGATGGTAATTC
LOC_Os10g34030
Os.46663.1.S1_x_at--240--1551Chr10:17821652..17821676 (25 bp)
AGCATTATCTGGTTGGGCGTGCCAA
LOC_Os10g34030
Os.46663.1.S1_x_at--891--4191Chr10:17821604..17821628 (25 bp)
CCCGGTCATGTCATTGTTGTGCTAT
LOC_Os10g34030
Os.46663.1.S1_x_at--26--7011Chr10:17821576..17821600 (25 bp)
GTACTCACATTTCTTTGAACCCATA
LOC_Os10g34030
Os.46663.1.S1_x_at--863--7951Chr10:17821483..17821507 (25 bp)
GGATCAATATCCTATTTGTCCCAGA
LOC_Os10g34030
Os.46663.1.S1_x_at--1118--5211Chr10:17821370..17821394 (25 bp)
GAATATTCGTGTTGGCAATTCGTAT
LOC_Os10g34030
Os.46663.1.S1_x_at--16--8231Chr10:17821357..17821381 (25 bp)
GGCAATTCGTATTAACAGGCTATGA
LOC_Os10g34030
Os.46663.1.S1_x_at--433--8311Chr10:17821340..17821364 (25 bp)
GGCTATGATAATACTACTGCTGATG
LOC_Os10g34030
Target Sequence 
AGCTCAACTGAATTGGCTCACGTATGGAACANGGGAGTGGATGAGACTCTCGGACGACTTGTTGCATACCTCAGCTCTCG
TGGATGGTAATTCAAGCATTATCTGGTTGGGCGTGCCAAAGTTAACAGGTGGAGCATGCCTCCCCGGTCATGTCATTGTT
GTGCTATGATGTACTCACATTTCTTTGAACCCATAGCTGAATACAATGATGTCTTTTTCTTTTTAATTTAAGAAAGGTTG
AACGATATCATGGATGAATGGATGGATCAATATCCTATTTGTCCCAGAAAAAATGTTCTTTCTGCTACAATTCTTNCATG
TATTACACACTTCGGGGACTTCATACTGGCCCNTGTCTATATGCTTCGTTTTGNAGCGAATATTCGTGTTGGCAATTCGT
ATTAACAGGCTATGATAATACTACTGCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46663.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis