Browse Element(s) Details


Os.46664.1.A1_at

Description gb:NM_197023.1
DB_XREF= gi:37535405
TID=Os.46664.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0055P24.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0055P24.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g338749/11expressed protein
LOC_Os10g338862/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33830OsAffx.22433.2.S1_at10/1110+17615891..17627535MATH domain containing protein
LOC_Os10g33840Os.8626.1.S1_a_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_s_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.1.S1_x_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_x_at10/1110+17631084..17635089expressed protein
LOC_Os10g33850OsAffx.29627.1.S1_at11/1110+17636496..17638453hypothetical protein
LOC_Os10g33862NANA10+17644205..17645488expressed protein
LOC_Os10g33874Os.46665.1.S1_at11/1110+17650903..17656065expressed protein
LOC_Os10g33874Os.46664.1.A1_at9/1110+17650903..17656065expressed protein
LOC_Os10g33886Os.46664.1.A1_at2/1110+17656069..17656478hypothetical protein
LOC_Os10g33900Os.46093.1.S1_at11/1110+17671465..17676405expressed protein
LOC_Os10g33910Os.46571.1.S1_at11/1110+17677552..17680311Uncharacterised protein family containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46664.1.A1_at--400--10051Chr10:17655020..17655044 (25 bp)
TAGTTGCAGAGAGGCCATGTAACCA
LOC_Os10g33874
Os.46664.1.A1_at--988--2851Chr10:17655050..17655074 (25 bp)
AAGTGTCACTCGGTGCTGACTGGAG
LOC_Os10g33874
Os.46664.1.A1_at--339--1291Chr10:17655182..17655206 (25 bp)
AGATGCCACCCCAATTGAACTTCAT
LOC_Os10g33874
Os.46664.1.A1_at--127--5491Chr10:17655198..17655222 (25 bp)
GAACTTCATCCATGTAACGACGAAT
LOC_Os10g33874
Os.46664.1.A1_at--1010--5311Chr10:17655234..17655258 (25 bp)
GAAGGGTCACTGTGTGGGCATCACT
LOC_Os10g33874
Os.46664.1.A1_at--767--5511Chr10:17655295..17655319 (25 bp)
GAAAACCTCCTACTTGTCGGATGGA
LOC_Os10g33874
Os.46664.1.A1_at--949--7451Chr10:17655923..17655947 (25 bp)
GTGTGCATTCATGGCATGGCGCCAA
LOC_Os10g33874
Os.46664.1.A1_at--928--2291Chr10:17655947..17655971 (25 bp)
AAATGTGAAGCTGATGCCCAACAAG
LOC_Os10g33874
Os.46664.1.A1_at--747--2351Chr10:17656004..17656028 (25 bp)
AAAGCCTCCACTGTTGATGATCTGC
LOC_Os10g33874
Os.46664.1.A1_at--188--5251Chr10:17656324..17656348 (25 bp)
GAATCATGGGCCAGGTGCTGCACAG
LOC_Os10g33886
Os.46664.1.A1_at--570--931Chr10:17656355..17656379 (25 bp)
AGGCACACACACTGCTTGCTTTGGC
LOC_Os10g33886
Target Sequence 
TAGTTGCAGAGAGGCCATGTAACCAAAATTAAGTGTCACTCGGTGCTGACTGGAGGTCATGGAATGTGAAATTCCAACGT
ATCAACAGAGATGCCACCCCAATTGAACTTCATCCATGTAACGACGAATTTTTGGTCATTGAAGGGTCACTGTGTGGGCA
TCACTGAAAACCAAGTTGATCAGAGGGGATCCATGAAGCATGAAAACCTCCTACTTGTCGGATGGAAGAGGACAAGGATG
AGGCTAGCCATCCCACTCTCCTACTGAAGAGCATCTTGTCAGGAACAGGGAAGACCCAGGATTTGGAAGCTAGATGGAGT
ATAAAGTGTGTGCATTCATGGCATGGCGCCAAAATGTGAAGCTGATGCCCAACAAGCTCAAGGACGACGTGCTAGAGGAC
AATCGGATAAAGCCTCCACTGTTGATGATCTGCGGCAAGAGGGATAGNNNNNNNNNANNNNNGNNNAAAATTTGCCCGTT
TCAGAAGGCAAGGGTGGAAGCAGAATCATGGGCCAGGTGCTGCACAGGCTCACAGGCACACACACTGCTTGCTTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46664.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis