Browse Element(s) Details


Os.467.1.S1_a_at

Description gb:AY271618.1
DB_XREF= gi:33304607
TID=Os.467.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.467 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) PDR-type ABC transporter 9 mRNA, complete cds.
PROD=PDR-type ABC transporter 9
FL= gb:AK058981.1 gb:AK100135.1 gb:AY271618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4238011/11PDR5-like ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42350OsAffx.11437.1.S1_at11/111+24374392..24382766PDR5-like ABC transporter, putative
LOC_Os01g42360OsAffx.9141.2.A1_at11/111+24388110..24388406hypothetical protein
LOC_Os01g42370OsAffx.11437.1.S1_at3/111+24392055..24400469PDR5-like ABC transporter, putative, expressed
LOC_Os01g42380Os.467.1.S1_a_at11/111+24401918..24408853PDR5-like ABC transporter, putative, expressed
LOC_Os01g42380Os.17966.1.A1_x_at2/111+24401918..24408853PDR5-like ABC transporter, putative, expressed
LOC_Os01g42400Os.45422.1.S1_x_at1/111+24430197..24432677Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.467.1.S1_a_at--108--4231Chr01:24402500..24402616 (25 bp)
CCGACCTAGAGTCCCAATCTGGTGG
LOC_Os01g42380
Os.467.1.S1_a_at--757--6011Chr01:24402476..24402500 (25 bp)
GAGATGGTATTGCTGGGCGTGCCCC
LOC_Os01g42380
Os.467.1.S1_a_at--715--9411Chr01:24402429..24402453 (25 bp)
TCGTCGTCTCCCAGTTCGGTGACAT
LOC_Os01g42380
Os.467.1.S1_a_at--476--1231Chr01:24402417..24402441 (25 bp)
AGTTCGGTGACATCGAGACGCCGAT
LOC_Os01g42380
Os.467.1.S1_a_at--459--1391Chr01:24402402..24402426 (25 bp)
AGACGCCGATGGAAGACGGCACCCC
LOC_Os01g42380
Os.467.1.S1_a_at--874--1331Chr01:24402389..24402413 (25 bp)
AGACGGCACCCCTGTGAAGGTGTTT
LOC_Os01g42380
Os.467.1.S1_a_at--156--6871Chr01:24402368..24402392 (25 bp)
GTTTGTGGAGAACTACTTCGGCTTC
LOC_Os01g42380
Os.467.1.S1_a_at--752--10611Chr01:24402352..24402376 (25 bp)
TTCGGCTTCAAGCACAGCTGGTTGG
LOC_Os01g42380
Os.467.1.S1_a_at--942--10291Chr01:24402296..24402320 (25 bp)
TTTCCTCTTCGCTTCCTTGTTTGGC
LOC_Os01g42380
Os.467.1.S1_a_at--16--4331Chr01:24402282..24402306 (25 bp)
CCTTGTTTGGCTTCGCTATCATGAA
LOC_Os01g42380
Os.467.1.S1_a_at--677--8491Chr01:24402275..24402299 (25 bp)
TGGCTTCGCTATCATGAAGTTCAAC
LOC_Os01g42380
Target Sequence 
CCGACCTAGAGTCCCAATCTGGTGGAGATGGTATTGCTGGGCGTGCCCCGTCGCGTGGACGCTGTACGGCCTCGTCGTCT
CCCAGTTCGGTGACATCGAGACGCCGATGGAAGACGGCACCCCTGTGAAGGTGTTTGTGGAGAACTACTTCGGCTTCAAG
CACAGCTGGTTGGGCTGGGTGGCCACCGTGGTCGCTGCCTTCGCTTTCCTCTTCGCTTCCTTGTTTGGCTTCGCTATCAT
GAAGTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.467.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis