Browse Element(s) Details


Os.46728.1.S1_at

Description gb:CB000629
DB_XREF= gi:27577934
DB_XREF=S345Q_F04
TID=Os.46728.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0087H07.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g048005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04770OsAffx.20758.1.S1_at11/1110+2273167..2277200expressed protein
LOC_Os10g04780Os.46729.1.S1_at10/1110+2280854..2284863F-box domain containing protein, expressed
LOC_Os10g04790OsAffx.30280.1.S1_x_at11/1110+2291947..2292198hypothetical protein
LOC_Os10g04800Os.46728.1.S1_at5/1110+2301441..2301732hypothetical protein
LOC_Os10g04810OsAffx.31869.2.S1_at10/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.13933.1.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.5.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.4.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.3.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.1.S1_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04840OsAffx.30282.1.S1_at11/1110+2323745..2324838hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46728.1.S1_at--223--2351Chr10:2301446..2301470 (25 bp)
AAAGAACCTGTCAATCTCCGTTCAG
LOC_Os10g04800
Os.46728.1.S1_at--304--9571Chr10:2301484..2301508 (25 bp)
TCTTCGTTTTACTCGCTTTTGCCAG
LOC_Os10g04800
Os.46728.1.S1_at--1087--551Chr10:2301513..2301537 (25 bp)
ATCCTCGCACAAGGTGGACCAAGCA
LOC_Os10g04800
Os.46728.1.S1_at--981--8531Chr10:2301527..2301551 (25 bp)
TGGACCAAGCACCTGCACGGACAAT
LOC_Os10g04800
Os.46728.1.S1_at--642--9031Chr10:2301540..2301700 (25 bp)
TGCACGGACAATCCTGTGCAGCAAG
LOC_Os10g04800
Os.46728.1.S1_at--615--6692Chr10:2301745..2301769 (25 bp)
GTTGCCACCGGATCCATGCATGGAT
NONE
Os.46728.1.S1_at--557--3171Chr10:2301791..2301815 (25 bp)
AATTGATCACGTGCCATATAGTAGT
NONE
Os.46728.1.S1_at--53--10311Chr10:2301817..2301841 (25 bp)
TTTCTACGCAGCAAGTTTACTACGG
NONE
Os.46728.1.S1_at--1162--2011Chr10:2301835..2301859 (25 bp)
ACTACGGAGTACTTTCTCAGTCAAT
NONE
Os.46728.1.S1_at--272--3451Chr10:2301852..2301876 (25 bp)
CAGTCAATAAAACCCATTTCTGGAT
NONE
Os.46728.1.S1_at--527--7291Chr10:2301907..2301930 (24 bp)
GTGCCGTGCGTTGCTTGTAATGATT
NONE
Target Sequence 
AAAGAACCTGTCAATCTCCGTTCAGCTGCTTCTCGTCCTCTTCGTTTTACTCGCTTTTGCCAGCGGCATCCTCGCACAAG
GTGGACCAAGCACCTGCACGGACAATCCTGTGCAGCAAGANTGCCCGCCAATCCNTGGTAGAGGNAANTAATGTTGCCAC
CGGATCCATGCATGGATGGACGATGCGGAGAAATATATAATTGATCACGTGCCATATAGTAGTATTTCTACGCAGCAAGT
TTACTACGGAGTACTTTCTCAGTCAATAAAACCCATTTCTGGATTTGAATATAGATATAGTGTTGATGTGTTTGTGCCGT
GCGTTGCTTGTAATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis